A full-length 18S ribosomal DNA metabarcoding approach for determining protist community diversity using Nanopore sequencing.

Protist diversity studies are frequently conducted using DNA metabarcoding methods. Currently, most studies have utilized short read sequences to assess protist diversity. One limitation of using short read sequences is the low resolution of the markers.

De novo transcriptome assembly and gene annotation for the toxic dinoflagellate Dinophysis.

Species within the dinoflagellate genus Dinophysis can produce okadiac acid and dinophysistoxins leading to diarrhetic shellfish poisoning. Since the first report of D. ovum from the Gulf of Mexico in 2008, reports of other Dinophysis species across US have increased.

Horizontal and vertical distribution of Gambierdiscus spp. (Dinophyceae) including novel phylotypes in Japan identified by 18S rDNA metabarcoding.

The genus Gambierdiscus is a marine benthic/epiphytic dinoflagellate considered the causative agent of ciguatera poisoning (CP). Clarifying the geographical distribution of this genus to understand the potential risk of CP is important. Many studies have focused only on the species/phylotype composition of Gambierdiscus in shallow waters, but no study has investigated the species/phylotype composition of the genus in deep waters.

Assessment of metal enrichment and contamination in surface sediment of Mandovi estuary, Goa, West coast of India.

Metal concentration in the sediments was determined to assess the metal enrichment and level of contamination in the Mandovi estuary. The metal distribution in the Mandovi estuary revealed preferential input through open-cast iron-ore mining, industrial, fishing, and agricultural activities. The heavy riverine runoff associated with high rainfall influenced the distribution of Mn, Zn, and Pb during monsoon season.