Publications by authors named "C A Farley"

Introduction: Characteristics of chronic obstructive pulmonary disease (COPD) can include shortness of breath, chronic cough, sputum production and reduced exercise capacity. The sit-to-stand (STS) test variations (e.g.

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Currently there is no detailed, internationally agreed protocol defined to evaluate antimicrobial susceptibility testing (AST) for Legionella pneumophila (required to establish epidemiological cut-off value or "ECOFF" boundaries); therefore, antimicrobial resistance in these isolates cannot be defined. AST methods utilising media containing activated charcoal as an ingredient, to enable Legionella growth, are unreliable as noted in an internationally authored opinion paper and a new gold standard is required. Here we define a detailed protocol for broth microdilution (BMD) using defined cell culture collection-deposited control reference strains (Philadelphia-1 and Knoxville-1) as well as two accessible reference strains with moderately (lpeAB-carrying) and markedly (23S rRNA mutation-carrying) elevated azithromycin minimum inhibitory concentration (MIC).

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  • Spatial transcriptomics provides valuable insights into tissue cellular landscapes, especially in cancer research focusing on the tumor microenvironment, but poses challenges in data interpretation.
  • This study evaluates Large Language Models (LLMs) to improve the analysis of spatial transcriptomic data from a murine melanoma model, finding that most models struggled, with Claude 3.5 Sonnet performing best for identifying gene expression patterns.
  • The LLM's capabilities facilitated a systematic workflow to analyze the tumor immune landscape, revealing complex immunosuppressive mechanisms and enhancing understanding of tumor immunology while highlighting the need for further development to scale such approaches.
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  • Survivors of critical illness often experience physical dysfunction post-ICU discharge, and the CYCLE trial aims to evaluate the effectiveness of in-bed cycle ergometry for improving short-term physical function in these patients.!* -
  • The CYCLE trial, involving 360 patients across multiple centers, employs a prespecified statistical analysis plan to assess outcomes like the PFIT-s score three days after ICU discharge, while considering variables such as age, frailty, and sex.!* -
  • Funded in 2017, the CYCLE study completed enrollment in May 2023, with data analyses finished and first results expected to be published in 2024.!*
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