Toward a new generation of agricultural system data, models, and knowledge products: State of agricultural systems science.

We review the current state of agricultural systems science, focusing in particular on the capabilities and limitations of agricultural systems models. We discuss the state of models relative to five different Use Cases spanning field, farm, landscape, regional, and global spatial scales and engaging questions in past, current, and future time periods. Contributions from multiple disciplines have made major advances relevant to a wide range of agricultural system model applications at various spatial and temporal scales.

Towards a new generation of agricultural system data, models and knowledge products: Design and improvement.

This paper presents ideas for a new generation of agricultural system models that could meet the needs of a growing community of end-users exemplified by a set of Use Cases. We envision new data, models and knowledge products that could accelerate the innovation process that is needed to achieve the goal of achieving sustainable local, regional and global food security. We identify desirable features for models, and describe some of the potential advances that we envisage for model components and their integration.

Brief history of agricultural systems modeling.

Agricultural systems science generates knowledge that allows researchers to consider complex problems or take informed agricultural decisions. The rich history of this science exemplifies the diversity of systems and scales over which they operate and have been studied. Modeling, an essential tool in agricultural systems science, has been accomplished by scientists from a wide range of disciplines, who have contributed concepts and tools over more than six decades.

Reverse retrospective motion correction.

Purpose: One potential barrier for using prospective motion correction (PMC) in the clinic is the unpredictable nature of a scan because of the direct interference with the imaging sequence. We demonstrate that a second set of "de-corrected" images can be reconstructed from a scan with PMC that show how images would have appeared without PMC enabled.

Theory And Methods: For three-dimensional scans, the effects of PMC can be undone by performing a retrospective reconstruction based on the inverse of the transformation matrix used for real time gradient feedback.

Optical tracking with two markers for robust prospective motion correction for brain imaging.

Objective: Prospective motion correction (PMC) during brain imaging using camera-based tracking of a skin-attached marker may suffer from problems including loss of marker visibility due to the coil and false correction due to non-rigid-body facial motion, such as frowning or squinting. A modified PMC system is introduced to mitigate these problems and increase the robustness of motion correction.

Materials And Methods: The method relies on simultaneously tracking two markers, each providing six degrees of freedom, that are placed on the forehead.

Dyslexia and language impairment associated genetic markers influence cortical thickness and white matter in typically developing children.

Dyslexia and language impairment (LI) are complex traits with substantial genetic components. We recently completed an association scan of the DYX2 locus, where we observed associations of markers in DCDC2, KIAA0319, ACOT13, and FAM65B with reading-, language-, and IQ-related traits. Additionally, the effects of reading-associated DYX3 markers were recently characterized using structural neuroimaging techniques.

Comparison of optical and MR-based tracking.

Purpose: The goal of this study was to compare the accuracy of two real-time motion tracking systems in the MR environment: MR-based prospective motion correction (PROMO) and optical moiré phase tracking (MPT).

Methods: Five subjects performed eight predefined head rotations of 8° ± 3° while being simultaneously tracked with PROMO and MPT. Structural images acquired immediately before and after each tracking experiment were realigned with SPM8 to provide a reference measurement.

Epoxy-based broadband antireflection coating for millimeter-wave optics.

We have developed epoxy-based, broadband antireflection coatings for millimeter-wave astrophysics experiments with cryogenic optics. By using multiple-layer coatings where each layer steps in dielectric constant, we achieved low reflection over a wide bandwidth. We suppressed the reflection from an alumina disk to 10% over fractional bandwidths of 92% and 104% using two-layer and three-layer coatings, respectively.

Propagation of calibration errors in prospective motion correction using external tracking.

Purpose: Prospective motion correction of MRI scans using an external tracking device (such as a camera) is becoming increasingly popular, especially for imaging of the head. In order for external tracking data to be transformed into the MR scanner reference frame, the pose (i.e.

Prevention of motion-induced signal loss in diffusion-weighted echo-planar imaging by dynamic restoration of gradient moments.

Purpose: Head motion is a significant problem in diffusion-weighted imaging as it may cause signal attenuation due to residual dephasing during strong diffusion encoding gradients even in single-shot acquisitions. Here, we present a new real-time method to prevent motion-induced signal loss in DWI of the brain.

Methods: The method requires a fast motion tracking system (optical in the current implementation).

Scope for improved eco-efficiency varies among diverse cropping systems.

Global food security requires eco-efficient agriculture to produce the required food and fiber products concomitant with ecologically efficient use of resources. This eco-efficiency concept is used to diagnose the state of agricultural production in China (irrigated wheat-maize double-cropping systems), Zimbabwe (rainfed maize systems), and Australia (rainfed wheat systems). More than 3,000 surveyed crop yields in these three countries were compared against simulated grain yields at farmer-specified levels of nitrogen (N) input.

Real-time dynamic frequency and shim correction for single-voxel magnetic resonance spectroscopy.

Subject motion during brain magnetic resonance spectroscopy acquisitions generally reduces the magnetic field (B₀) homogeneity across the volume of interest or voxel. This is the case even if prospective motion correction ensures that the voxel follows the head. We introduce a novel method for rapidly mapping linear variations in B₀ across a small volume using two-dimensional excitations.

Prospective motion correction for single-voxel 1H MR spectroscopy.

Head motion during (1)H MR spectroscopy acquisitions may compromise the quality and reliability of in vivo metabolite measurements. Therefore, a three-plane image-based motion-tracking module was integrated into a single-voxel (1)H MR spectroscopy (point-resolved spectroscopy) sequence. A series of three orthogonal spiral navigator images was acquired immediately prior to the MR spectroscopy water suppression module in order to estimate head motion.

Entropic lattice Boltzmann representations required to recover Navier-Stokes flows.

There are two disparate formulations of the entropic lattice Boltzmann scheme: one of these theories revolves around the analog of the discrete Boltzmann H function of standard extensive statistical mechanics, while the other revolves around the nonextensive Tsallis entropy. It is shown here that it is the nonenforcement of the pressure tensor moment constraints that lead to extremizations of entropy resulting in Tsallis-like forms. However, with the imposition of the pressure tensor moment constraint, as is fundamentally necessary for the recovery of the Navier-Stokes equations, it is proved that the entropy function must be of the discrete Boltzmann form.

Analysis of the shadow-sausage effect caustic.

We analyze the optical caustic produced by light refracted at the curved meniscus surrounding a cylindrical rod standing partially out of a liquid-filled container. When the rod is tilted from the vertical or when light is diagonally incident, the caustic is a four-cusped astroid with two of its cusps obscured by the rod's shadow. If a portion of the flat end of the rod is raised above the water level, the caustic evolves into a pattern of five interlocking cusps.

Experimental observation of total-internal-reflection rainbows.

A new class of rainbows is created when a droplet is illuminated from the inside by a point light source. The position of the rainbow depends on both the index of refraction of the droplet and the position of the light source, and the rainbow vanishes when the point source is too close to the center of the droplet. Here we experimentally measure the position of the transmission and one-internal-reflection total-internal-reflection rainbows, and the standard (primary) rainbow, as a function of light-source position.