Publications by authors named "Boutet I"

Article Synopsis
  • The bay scallop (Argopecten irradians) is important commercially, culturally, and ecologically, primarily found on the eastern U.S. coast but also farmed in China.
  • Researchers assembled a detailed chromosome-level reference genome for the bay scallop, with a total size of 845.9 Mb across 1,503 scaffolds and confirmed 16 chromosomes.
  • The genome includes a significant amount of repetitive elements (36.2%), is highly complete (96.2% according to BUSCO analysis), and contains 33,772 protein-coding genes, providing a resource for future evolutionary and conservation studies.
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  • Ocean acidification (OA) poses a significant threat to marine life, particularly the eastern oyster (C. virginica), and this study investigates how these oysters can withstand OA through molecular mechanisms.
  • Researchers conducted experiments with oyster larvae, comparing the gene expression and genetic variation of individuals raised in normal vs. acidified conditions, revealing significant changes, especially in genes tied to shell formation and immune function.
  • The findings indicate that while short-term acclimation to OA is possible, it may come with sustainability concerns, highlighting the necessity of selecting resilient genetic variants for future oyster conservation and aquaculture efforts.
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Disparities in healthcare for underrepresented and stigmatized groups are well documented. Current understanding is that these inequalities arise, at least in part, from psychosocial factors such as stereotypes and in-group/out-group categorization. Pain management, perhaps because of the subjective nature of pain, is one area of research that has spearheaded these efforts.

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The European flat oyster ( L.) is a bivalve naturally distributed across Europe, which was an integral part of human diets for centuries, until anthropogenic activities and disease outbreaks severely reduced wild populations. Despite a growing interest in genetic applications to support population management and aquaculture, a reference genome for this species is lacking to date.

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  • The European flat oyster's population has drastically declined due to two parasites, leading to stock collapse and loss of natural beds.
  • Research has focused on understanding immune responses to these parasites and developing genetic programs to enhance parasite resistance.
  • A newly completed chromosome-level genome assembly provides insights into the oyster's genetic makeup and is crucial for ongoing studies in breeding, aquaculture, and restoration of natural habitats.
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This volume of Evolutionary Applications sees the publication of two genomes for the European native flat oyster , a species of significant evolutionary, ecological and commercial value. Each is a highly contiguous chromosome-level assembly from individuals of different genetic backgrounds, which have been benchmarked against one another. This situation has resulted from the serendipitous discovery that two independent research groups were both deep into the process of building, annotating and investigating separately produced assemblies.

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  • The increase in CO2 levels is leading to ocean acidification, which threatens coastal marine ecosystems and important species like the northern quahog clam.
  • Research on the physiological effects of ocean acidification on this clam has shown negative impacts on growth and survival, but the molecular mechanisms behind their resilience remain unclear.
  • A study involving fertilized clam gametes revealed significant changes in gene expression and allele frequencies in clams reared under acidified conditions, focusing on genes related to shell formation, immune response, and metabolism that may help them cope with acidification.
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  • The hard clam Mercenaria mercenaria is an important marine species along the Atlantic coast, facing threats from diseases and environmental stress, making genome characterization essential for research and aquaculture.
  • A detailed genome assembly of 1.86 Gb revealed 19 chromosomes and 34,728 predicted protein-coding genes, showing significant similarities and variations compared to other clam species, particularly in immune-related proteins.
  • This study highlights the hard clam's diverse immune response, which may enhance its ability to deal with infections and environmental changes.
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Expected effects on marine biota of the ongoing elevation of water temperature and high latitudes is of major concern when considering the reliability of coastal ecosystem production. To compare the capacity of coastal organisms to cope with a temperature increase depending on their environmental history, responses of adult blue mussels (Mytilus spp.) taken from two sites differentially exposed to chemical pollution were investigated during an experimental exposure to a thermal stress.

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Background: Face-identity processing declines with age. Few studies have examined whether face-identity processing abilities can be measured independently from general cognitive abilities in older adults (OA). This question has practical implications for the assessment of face-identity processing abilities in OA and theoretical implications for the notion of face processing as a specific ability.

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The Kerguelen Islands (49°26'S, 69°50'E) represent a unique environment due to their geographical isolation, which protects them from anthropogenic pollution. The ability of the endemic mussel, part of the Mytilus complex, to cope with moderate heat stress was explored using omic tools. Transcripts involved in six major metabolic functions were selected and the qRT-PCR data indicated mainly changes in aerobic and anaerobic energy metabolism and stress response.

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Holistic processing, which includes the integration of facial features and analysis of their relations to one another, is a hallmark of what makes faces 'special'. Various experimental paradigms purport to measure holistic processing but these have often produced inconsistent results. This has led researchers to question the nature and structure of the mechanism(s) underlying holistic processing.

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  • Hard clam populations in the northeastern U.S. have been declining due to a parasite called QPX, which affects both wild and aquacultured stocks.
  • This study identifies specific genetic variants (SNPs) linked to clam survivorship, analyzing samples from two distinct populations before and after QPX-related deaths using a draft genome assembly.
  • Approximately 200 genes showed significant variations, with 18 genes common to both populations, pointing towards pathways that may help in breeding clams resistant to QPX through marker-assisted selection.
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Healthy aging is associated with impairments in face recognition. While earlier research suggests that these impairments arise during memory retrieval, more recent findings suggest that earlier mechanisms, at the perceptual stage, may also be at play. However, results are often inconsistent and very few studies have included a non-face control stimulus to facilitate interpretation of results with respect to the implication of specialized face mechanisms vs.

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Older adults consistently show elevated rates of false recognition of new items that are related to studied items. This finding has been largely attributed to a greater tendency for older adults to rely on conceptual gist during memory recognition tasks. However, perceptual factors may also be implicated considering that related items are not only conceptually but also perceptually similar.

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To generate meaningful information, translational research must employ paradigms that allow extrapolation from animal models to humans. However, few studies have evaluated translational paradigms on the basis of defined validation criteria. We outline three criteria for validating translational paradigms.

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Objectives: We simultaneously investigated the role of three hypotheses regarding age-related differences in face processing: perceptual degradation, impaired holistic processing, and an interaction between the two.

Methods: Young adults (YA) aged 20-33-year olds, middle-age adults (MA) aged 50-64-year olds, and older adults (OA) aged 65-82-year olds were tested on the context congruency paradigm, which allows measurement of face-specific holistic processing across the life span (Meinhardt-Injac, Persike & Meinhardt, 2014. Acta Psychologica, 151, 155-163).

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Article Synopsis
  • - The study investigated how participants' eye movements change when identifying upright and inverted faces based on two types of information: configural (relationship between features) and featural (specific features).
  • - Two experiments were conducted—one where participants were unaware of the type of information relevant to the task, and another where they were informed— to see how prior knowledge affected their eye movement patterns.
  • - Results showed that eye scanning patterns differ based on task demands; without prior knowledge, participants focused on the eyes, while with prior knowledge of relational information, they looked more at the center of the face.
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Few published reports examine the development of holistic face processing across the lifespan such that face-specific processes are adequately differentiated from general developmental effects. To address this gap in the literature, we used the complete design of the composite paradigm (Richler & Gauthier, 2014) with faces and non-face control objects (watches) to investigate holistic processing in children (8-10years), young adults (20-32years) and older adults (65-78years). Several modifications to past research designs were introduced to improve the ability to draw conclusions about the development of holistic processing in terms of face-specificity, response bias, and age-related differences in attention.

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Age-related face recognition deficits are characterized by high false alarms to unfamiliar faces, are not as pronounced for other complex stimuli, and are only partially related to general age-related impairments in cognition. This paper reviews some of the underlying processes likely to be implicated in theses deficits by focusing on areas where contradictions abound as a means to highlight avenues for future research. Research pertaining to the three following hypotheses is presented: (i) perceptual deterioration, (ii) encoding of configural information, and (iii) difficulties in recollecting contextual information.

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Hydrothermal vent mussels belonging to the genus Bathymodiolus dominate communities at hydrothermal sites of the Mid-Atlantic Ridge. The mussel Bathymodiolus azoricus harbors thiotrophic and methanotrophic symbiotic bacteria in its gills and evolves in naturally highly metal contaminated environments. In the context of investigations on metal tolerance/effect in B.

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Previous work has shown mixed results regarding the role of different spatial frequency (SF) ranges in featural and configural processing of faces. Some studies suggest no special role of any given band for either type of processing, while others suggest that low SFs principally support configural analysis. Here we attempt to put this issue on a more rigorous footing by comparing human performance when making featural and configural discriminations with that of a model observer algorithm carrying out the same task.

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The thermal limit for metazoan life, expected to be around 50°C, has been debated since the discovery of the Pompeii worm Alvinella pompejana, which colonizes black smoker chimney walls at deep-sea vents. While indirect evidence predicts body temperatures lower than 50°C, repeated in situ temperature measurements depict an animal thriving at temperatures of 60°C and more. This controversy was to remain as long as this species escaped in vivo investigations, due to irremediable mortalities upon non-isobaric sampling.

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Taking advantage of the massive genome sequencing effort made on thermophilic prokaryotes, thermal adaptation has been extensively studied by analysing amino acid replacements and codon usage in these unicellular organisms. In most cases, adaptation to thermophily is associated with greater residue hydrophobicity and more charged residues. Both of these characteristics are positively correlated with the optimal growth temperature of prokaryotes.

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Background: The deep-sea hydrothermal vent mussel Bathymodiolus azoricus harbors thiotrophic and methanotrophic symbiotic bacteria in its gills. While the symbiotic relationship between this hydrothermal mussel and these chemoautotrophic bacteria has been described, the molecular processes involved in the cross-talking between symbionts and host, in the maintenance of the symbiois, in the influence of environmental parameters on gene expression, and in transcriptome variation across individuals remain poorly understood. In an attempt to understand how, and to what extent, this double symbiosis affects host gene expression, we used a transcriptomic approach to identify genes potentially regulated by symbiont characteristics, environmental conditions or both.

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