A simple method for testing and controlling inhibition in soil and sediment samples for qPCR.

The presence of polymerase-chain-reaction (PCR) inhibitors in many environmental samples can make reliable and repeatable quantitative-polymerase-chain-reaction (qPCR) analysis difficult without sample dilution. To estimate an optimal sample dilution for qPCR and reduce effects of inhibition, a simple test based on multiple dilution series of samples is presented that avoids the use of internal controls and standards reducing complexity and cost.

A specific dispiropiperazine derivative that arrests cell cycle, induces apoptosis, necrosis and DNA damage.

Dispiropiperazine compounds are a class of molecules known to confer biological activity, but those that have been studied as cell cycle regulators are few in number. Here, we report the characterization and synthesis of two dispiropiperazine derivatives: the previously synthesized spiro[2',3]-bis(acenaphthene-1'-one)perhydrodipyrrolo-[1,2-a:1,2-d]-pyrazine (SPOPP-3, 1), and its previously undescribed isomer, spiro[2',5']-bis(acenaphthene-1'-one)perhydrodipyrrolo-[1,2-a:1,2-d]-pyrazine (SPOPP-5, 2). SPOPP-3 (1), but not SPOPP-5 (2), was shown to have anti-proliferative activity against a panel of 18 human cancer cell lines with IC values ranging from 0.

Lymphoedema and cancer: an overview.

Secondary lymphoedema is a common concern for people with cancer. , Clinical Trials Database Nurse, Cancer Research UK (Trevor.Bott@cancer.

Applications of the Speed-Accuracy Trade-off and Impulse-Variability Theory for Teaching Ballistic Motor Skills.

Bridging the gap between innovative research and teaching is a fundamental necessity for physical education practitioners to promote motor skill development and competency. This requires practitioners to understand, synthesize, and appropriately apply relevant research from different academic domains in their instructional environments. Ballistic motor skills such as kicking, throwing, and striking are fundamentally integrated into many games and sports and provide a foundation for physical activity and fitness for children and adults.

Physiological and emotional effects of pentatonic live music played for preterm neonates and their mothers in the Newborn Intensive Care Unit: A randomized controlled trial.

Objective: Despite attempts to increase calmness in the Newborn Intensive Care Unit (NICU), preterm neonates still experience stress. The question arises how to further promote the infants' wellbeing. Therefore, the immediate effects of pentatonic live music on preterm infants and their mothers were examined.

Esophageal Diameters in Children Correlated to Body Weight.

Introduction:  The development of stenoses after correction of an esophageal atresia or acid and lye burn of the esophagus are well-known problems in pediatric surgery. Currently, stenoses are treated in the majority of cases by repeated balloon dilatations. The diameter of the balloons used is not standardized; standard curves do not exist.

Affinity Crystallography: A New Approach to Extracting High-Affinity Enzyme Inhibitors from Natural Extracts.

Natural products are an important source of novel drug scaffolds. The highly variable and unpredictable timelines associated with isolating novel compounds and elucidating their structures have led to the demise of exploring natural product extract libraries in drug discovery programs. Here we introduce affinity crystallography as a new methodology that significantly shortens the time of the hit to active structure cycle in bioactive natural product discovery research.

[A Randomized Controlled Trial on the Effect of Earmuffs on Intermittent Hypoxia and Bradycardia in Preterm Infants].

Background: Irregular breathing causing hypoxia and bradycardia is a common problem of preterm infants but its pathophysiology is incompletely understood. Agitation provoked by environmental noise may play a role. We wanted to know if earmuffs can at least halve the rate of intermittent hypoxia in premies.

Abandoned coal mine drainage and its remediation: impacts on stream ecosystem structure and function.

The effects of abandoned mine drainage (AMD) on streams and responses to remediation efforts were studied using three streams (AMD-impacted, remediated, reference) in both the anthracite and the bituminous coal mining regions of Pennsylvania (USA). Response variables included ecosystem function as well as water chemistry and macroinvertebrate community composition. The bituminous AMD stream was extremely acidic with high dissolved metals concentrations, a prolific mid-summer growth of the filamentous alga, Mougeotia, and > 10-fold more chlorophyll than the reference stream.

One-carbon ring expansion of azetidines via ammonium ylide [1,2]-shifts: a simple route to substituted pyrrolidines.

Simple N-substituted azetidines were heated with diazocarbonyl compounds in the presence of catalytic Cu(acac)(2) to furnish substituted pyrrolidines via Stevens [1,2]-shift. In all but two examples, complete selectivity was seen for ring expansion rather than migration of the other exocyclic group on the azetidinium nitrogen. The two exceptions, observed with ylides substituted with two carbonyl groups and lacking a stabilizing group at the 2-position of the azetidine, underwent exocyclic benzyl migration in preference to ring expansion.

Nutrient limitation and morphological plasticity of the carnivorous pitcher plant Sarracenia purpurea in contrasting wetland environments.

* Plasticity of leaf nutrient content and morphology, and macronutrient limitation were examined in the northern pitcher plant, Sarracenia purpurea subsp. purpurea, in relation to soil nutrient availability in an open, neutral pH fen and a shady, acidic ombrotrophic bog, over 2 yr following reciprocal transplantation of S. purpurea between the wetlands.

Effects of operating conditions on the adhesive strength of Pseudomonas fluorescens biofilms in tubes.

Understanding the mechanical properties of biofilms, especially the force required to disrupt them and remove them from substrata is very important to development of antibiofouling strategies. In this work, a novel micromanipulation technique with a specially designed T-shaped probe has been developed to serve as an experimental means to measure directly the adhesive strength of biofouling deposits on the surface of a glass test stud. The basic principle of this novel technique is to pull away a whole biofilm accumulated on the surface of a glass test stud with T-shaped probe, and to measure simultaneously the force imposed on the biofilm.

Riparian deforestation, stream narrowing, and loss of stream ecosystem services.

A study of 16 streams in eastern North America shows that riparian deforestation causes channel narrowing, which reduces the total amount of stream habitat and ecosystem per unit channel length and compromises in-stream processing of pollutants. Wide forest reaches had more macroinvertebrates, total ecosystem processing of organic matter, and nitrogen uptake per unit channel length than contiguous narrow deforested reaches. Stream narrowing nullified any potential advantages of deforestation regarding abundance of fish, quality of dissolved organic matter, and pesticide degradation.

Ultrasound enhancement of biocide efficiency.

In order to take account of the likely increase in costs of biocides in the light of increasing legislation and concern for the environment, there is a need to maximise the efficiency of biocides for the control of biofouling. The use of ultrasound in conjunction with biocides offers such an opportunity. Tests have been carried out using ultrasound generated at 20 kHz in conjunction with the oxidising biocide ozone, in a laboratory pilot plant, to investigate the effects of mutuality.

Laboratory modelling of manganese biofiltration using biofilms of Leptothrix discophora.

Laboratory biofilters (pilot-scale, 20 l and laboratory-scale, 5l) were constructed in order to model the bioaccumulation of manganese (Mn) under flow conditions similar to those occurring in biofilters at groundwater treatment sites. The biofilters were operated as monocultures of Leptothrix discophora, the predominant organism in mature Mn oxidising biofilms. Biologically mediated Mn bioaccumulation was successfully modelled in both filter systems.

Biofouling assessment using an infrared monitor.

The paper details the design of an infrared monitor for detecting biofilm accumulation on surfaces in flowing systems. It is based on the principle that the amount of infrared radiation absorbed by a biofilm, is proportional to the amount of biofilm present. The test surface in the monitor has to be transparent in order to allow the passage of the radiation, so that the radiation absorbed is solely due to the presence of the biofilm.

Autecological properties of 3-chlorobenzoate-degrading bacteria and their population dynamics when introduced into sediments.

Ecologically significant properties of wild-type and genetically engineered bacteria capable of degrading 3-chlorobenzoate (3-CB) were compared in the laboratory, and isolates were introduced into streambed sediments in microcosms to observe their population dynamics. 3-CB metabolism, growth on algal extract, temperature optima, and ingestion by protozoa were ecological properties considered relevant to the persistence of these bacteria if introduced into nature. Cell-specific Vmax for 3-CB metabolism and cell-specific mineralization rates each spanned approximately 2 orders of magnitude, but isolates did not rank consistently.

Development of a rapid assimilable organic carbon method for water.

A rapid method for measurement of assimilable organic carbon (AOC) is proposed. The time needed to perform the assay is reduced by increasing the incubation temperature and increasing the inoculum density. The ATP luciferin-luciferase method quickly enumerates the test organisms without the need for plate count media or dilution bottles.

Evaluation and simplification of the assimilable organic carbon nutrient bioassay for bacterial growth in drinking water.

A modified assimilable organic carbon (AOC) bioassay is proposed. We evaluated all aspects of the AOC bioassay technique, including inoculum, incubation water, bioassay vessel, and enumeration technique. Other concerns included eliminating the need to prepare organic carbon-free glassware and minimizing the risks of bacterial and organic carbon contamination.

Assessment of [h]thymidine incorporation into DNA as a method to determine bacterial productivity in stream bed sediments.

We performed several checks on the underlying assumptions and procedures of the thymidine technique applied to stream bed sediments. Bacterial production rates were not altered when sediments were mixed to form a slurry. Incubation temperature did affect production rates.