Publications by authors named "Boocock D"

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  • Current aqueous-based tryptic digestion methods face challenges like long digestion times and variability in peptide identification and sequence coverage.
  • The Denaturing Organic Digestion (DOD) method offers a faster alternative, requiring only common solvents and reagents, without needing expensive equipment.
  • Results showed that the DOD method generated similar peptide profiles to traditional methods but identified more hydrophilic peptides; longer digestion times improved precision and peptide identification.
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Background: The importance of parental diet in relation to eventual offspring health is increasing in prominence due to the increased frequency of parents of reproductive age consuming poor diets. Whilst maternal health and offspring outcome have been studied in some detail, the paternal impacts are not as well understood. A father's poor nutritional status has been shown to have negative consequences on foetal growth and development and ultimately impact the long-term adult health of the offspring.

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The need for anticancer therapies that overcome metallodrug resistance while minimizing adverse toxicities is targeted, herein, using titanium coordination complexes. Octahedral titanium(IV) ,-[Ti{RN(CH-2-MeO-4-R-CH)}] [R = Et, allyl, -Pr, CHO, F, CH(morpholino), the latter from the formyl derivative; R = Me, Et; not all combinations] are attained from Mannich reactions of commercial 2-methoxyphenols (27-74% overall yield, 2 steps). These crystalline (four X-ray structures) Ti(IV)-complexes are active against MCF-7, HCT-116, HT-29, PANC-1, and MDA-MB-468 cancer cell lines (GI = 0.

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  • The study explored how xylo-oligosaccharide (XOS) helps chickens digest complex polysaccharides through their caecal bacteria, using a detailed protein analysis method.
  • The research involved feeding 800 Ross 308 broiler chicks two types of diets—one with XOS and one without—while measuring their growth and examining their caecal bacterial proteins after 35 days.
  • Results showed that XOS improved weight gain in the chicks at early stages, and proteomic analysis identified 29 differentially expressed proteins, particularly a group related to efficiently breaking down polysaccharides, highlighting the role of the Sus-like system in this process.
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Aims: Morphological studies of pancreas samples obtained from young people with recent-onset type 1 diabetes have revealed distinct patterns of immune cell infiltration of the pancreatic islets suggestive of two age-associated type 1 diabetes endotypes that differ by inflammatory responses and rates of disease progression. The objective of this study was to investigate whether these proposed disease endotypes are associated with pathological differences in immune cell activation and cytokine secretion by applying multiplexed gene expression analysis to pancreatic tissue from recent-onset type 1 diabetes cases.

Methods: RNA was extracted from samples of fixed, paraffin-embedded pancreas tissue from type 1 diabetes cases characterised by endotype and from controls without diabetes.

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  • PARP1 is an enzyme that modifies proteins with ADP-Ribose, playing a key role in genome maintenance and influencing cellular processes like muscle development and energy balance.
  • Recent research shows that PARP1 affects myogenesis and muscle response to steroid hormones, indicating its significant role even when there's no DNA damage.
  • Inhibition of PARP1 during early muscle cell differentiation disrupts the development of crucial muscle proteins, highlighting PARP1's importance in maintaining muscle tissue health and its interactions with glucocorticoids, which are known to influence muscle mass.
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Introduction: In the last decade, it has been discovered that allergen-bearing extracellular nanovesicles, termed "pollensomes", are released by pollen during germination. These extracellular vesicles (EVs) may play an important role in pollen-pistil interaction during fertilization, stabilizing the secreted bioactive molecules and allowing long-distance signaling. However, the molecular composition and the biological role of these EVs are still unclear.

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  • - Recent research indicates that miR-423-5p plays a significant role in regulating the growth and spread of prostate cancer cells, both in laboratory settings and in living organisms, by affecting protein expression.
  • - Proteomic analysis revealed 63 proteins that were differently expressed in prostate cancer cells with increased levels of miR-423-5p, leading to changes in metabolic processes like glycolysis and amino acid metabolism, as well as influences on immune response and transcriptional activity.
  • - The study also identified seven key proteins linked to miR-423-5p that affect patient survival rates, highlighting the potential of miR-423-5p to drive metabolic changes and impact various tumor-related processes in prostate cancer. *
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The p53 protein is mutated in more than 50% of human cancers. Mutated p53 proteins not only lose their normal function but often acquire novel oncogenic functions, a phenomenon termed mutant p53 gain-of-function. Mutant p53 has been shown to affect the transcription of a range of genes, as well as protein-protein interactions with transcription factors and other effectors; however, no one has intensively investigated and identified these proteins, or their MHC presented epitopes, from the viewpoint of their ability to act as targets for immunotherapeutic interventions.

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  • - Researchers discovered that extracellular vesicles (EVs) from astrocytes play a key role in regulating calcium levels within neurons, specifically highlighting transglutaminase-2 (TG2) as an important component on these EVs.
  • - When hippocampal neurons were treated with these TG2-containing EVs, calcium concentrations ([Ca]) increased dramatically, whereas EVs lacking TG2 did not produce this effect, indicating TG2’s significance in calcium dynamics.
  • - The study suggests that reactive astrocytes can influence neuronal activity and potentially affect synaptic functions during inflammation in the brain by modulating calcium levels through the release of TG2-containing EVs.
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Therapeutic activation of thermogenic brown adipose tissue (BAT) may be feasible to prevent, or treat, cardiometabolic disease. However, rodents are commonly housed below thermoneutrality (~20 °C) which can modulate their metabolism and physiology including the hyperactivation of brown (BAT) and beige white adipose tissue. We housed animals at thermoneutrality from weaning to chronically supress BAT, mimic human physiology and explore the efficacy of chronic, mild cold exposure (20 °C) and β3-adrenoreceptor agonism (YM-178) under these conditions.

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  • Amyloid-beta (Aβ) deposition is a key factor in the development of Alzheimer's disease (AD), but current therapies targeting it have not been successful, highlighting the need for new treatment strategies.
  • Transglutaminase-2 (TG2) is associated with AD and modifies protein activity, but its full range of interactions in both healthy and AD-affected brains is not well understood.
  • Research using APP23 mouse models and TG2 knockout mice shows that while TG2 absence doesn't significantly impact Aβ pathology, it is linked to changes in networks involved in synaptic transmission and cell adhesion, suggesting a role in the progression of AD.
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  • - The long non-coding RNA MALAT1 is linked to worse outcomes in prostate cancer (PCa) and interacts with microRNAs, but its exact functions and regulation are not fully understood.
  • - Research showed that higher MALAT1 levels correspond with more aggressive cancer features, including high Gleason grade and metastasis, and that miR-423-5p can inhibit MALAT1's effects on cancer cell growth and movement.
  • - The study provides evidence that targeting the MALAT1/miR-423-5p relationship could be a potential therapeutic strategy in PCa by increasing survival rates and reducing metastatic behavior.
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Type 2 diabetes is characterised by failure to control glucose homeostasis, with numerous diabetic complications attributable to the resulting exposure of cells and tissues to chronic elevated concentrations of glucose and fatty acids. This, in part, results from formation of advanced glycation and advanced lipidation end-products that are able to modify protein, lipid, or DNA structure, and disrupt normal cellular function. Herein we used mass spectrometry to identify proteins modified by two such adduction events in serum of individuals with obesity, type 2 diabetes, and gestational diabetes, along with similar analyses of human and mouse skeletal muscle cells and mouse pancreatic islets exposed to glucolipotoxic stress.

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Background: Homocitrullination is the post-translational modification of lysine that is recognized by T cells.

Methods: This study identified homocitrullinated peptides from aldolase, enolase, cytokeratin and binding immunoglobulin protein and used human leukocyte antigen (HLA) transgenic mice to assess immunogenicity by enzyme-linked immunosorbent spot assay. Vaccine efficacy was assessed in tumor therapy studies using HLA-matched B16 melanoma expressing constitutive or interferon γ (IFNγ)-inducible major histocompatibility complex class II (MHC-II) as represented by most human tumors.

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  • Exercise can boost bone regeneration and help manage conditions like osteoporosis and metastatic bone cancer, making it an important focus in regenerative rehabilitation (RR).
  • Osteocytes, which are sensitive to mechanical stress, play a key role in bone health and are targeted by exercise-based interventions, though the exact cellular responses to exercise are not fully understood.
  • Research using advanced technologies revealed that mechanical stretching of human osteocytes activates specific processes that could influence bone regeneration and cancer, showing significant differences from mouse osteocytes even though both share some similar signaling pathways.
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  • - A new chromatographic stationary phase made of silica-bound -butylpyrogallol[4]arene was created and analyzed using techniques like thermogravimetric analysis and scanning electron microscopy.
  • - The effectiveness of this new phase was tested with C60 and C70 fullerenes in reverse phase chromatography, showing it outperformed traditional methods in separating these molecules.
  • - The study also found that including toluene in the mobile phase helps improve the symmetry of peaks during flash column chromatography.
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Organophosphate compounds (OPs) induce both acute and delayed neurotoxic effects, the latter of which is believed to involve their interaction with proteins other than acetylcholinesterase. However, few OP-binding proteins have been identified that may have a direct role in OP-induced delayed neurotoxicity. Given their ability to disrupt Ca homeostasis, a key aim of the current work was to investigate the effects of sub-lethal neurite outgrowth inhibitory levels of OPs on the Ca-dependent enzyme tissue transglutaminase (TG2).

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Background: Chondrocytes are exposed to an inflammatory micro-environment in the extracellular matrix (ECM) of articular cartilage in joint diseases such as osteoarthritis (OA) and rheumatoid arthritis (RA). In OA, degenerative changes and low-grade inflammation within the joint transform the behaviour and metabolism of chondrocytes, disturb the balance between ECM synthesis and degradation, and alter the osmolality and ionic composition of the micro-environment. We hypothesize that chondrocytes adjust their physiology to the inflammatory microenvironment by modulating the expression of cell surface proteins, collectively referred to as the 'surfaceome'.

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  • - The study investigates how exercise training affects brown (BAT) and white adipose tissue (WAT) in obese rats kept at thermoneutrality (28°C), focusing on the metabolic changes that occur in these tissues during inactivity.
  • - After 4 weeks of swim training, exercise was found to reduce weight gain in the rats without changing total fat mass or thermogenic gene expression but showed significant alterations in metabolic processes and protein levels related to skeletal muscle physiology in BAT.
  • - The results suggest that exercise induces an oxidative signature in BAT independent of traditional thermogenic pathways, indicating a new mechanism of BAT regulation through exercise training that may not rely on the activation of UCP1, a key protein in fat metabolism.
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Metastasis is associated with poor prognosis in breast cancer. Although some studies suggest beta-blockers increase survival by delaying metastasis, others have been discordant. This study provides both insights into the anomalous findings and identifies potential biomarkers that may be treatment targets.

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  • A new type of co-pillar[4+1]arene was created with two bromo-octyl groups using microwave irradiation, achieving an 88% yield in under four minutes.
  • The synthesized compound was attached to chromatographic silica particles, forming a novel stationary phase.
  • This new phase has effectively separated xylene isomers using liquid chromatography techniques.
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  • The study investigates the surfaceome, which consists of cell surface proteins, as an indicator of normal cell differentiation and diseases like osteoarthritis (OA).
  • Researchers used advanced biochemical methods to analyze the surface proteins in chondrogenic progenitor cells (CPCs) from OA-affected knee cartilage and compared them to human mesenchymal stem cells (MSCs).
  • A total of 1256 proteins were identified, with 791 being linked to the cell surface; the findings aim to improve understanding of cellular changes in cartilage biology and OA, potentially aiding in therapeutic developments.
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  • Metformin, a common diabetes medication, shows potential for treating advanced breast cancer, but resistance varies among cancer types due to complex signaling pathways.
  • Research investigated how metformin interacts with different breast cancer cell lines, particularly focusing on the HER2+ phenotype, and its effects on cell behavior and PYK2 activation.
  • Results indicated that HER2+ breast cancer cells are more resistant to metformin compared to other types, revealing a link between this resistance and the activation of the protein PYK2.
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Brown adipose tissue (BAT) function may depend on its anatomical location and developmental origin. Interscapular BAT (iBAT) regulates acute macronutrient metabolism, whilst perivascular BAT (PVAT) regulates vascular function. Although phenotypically similar, whether these depots respond differently to acute nutrient excess is unclear.

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