Publications by authors named "Bonnin R"

Article Synopsis
  • * A total of 18 carbapenemase variants were identified, predominantly in ST131 clades A and C, with the most common variants being detected in 14 and 12 countries, respectively.
  • * The rise in isolates carrying these genes since 2021 highlights a significant public health threat posed by the high-risk ST131 lineage.
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  • Cefepime-enmetazobactam is a new antibiotic combination that effectively targets multidrug-resistant Enterobacterales, including ESBL producers, and was tested against various resistant bacteria.
  • The study evaluated the minimum inhibitory concentration (MIC) of cefepime-enmetazobactam compared to other antibiotic combinations on over 2,200 strains of carbapenem-resistant Enterobacterales and other pathogens.
  • Results showed that while cefepime-enmetazobactam had good activity against OXA-48 producers, it offered no significant advantage over cefepime alone in treating Pseudomonas aeruginosa and Acinetobacter baumannii, highlighting the need for further in vivo testing.
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As bloodstream infections and associated septic shock are common causes of mortality in hospitals, rapid antibiotic susceptibility testing (AST) performed directly on positive blood cultures is needed to implement an efficient therapy in clinical settings. We evaluated the Reveal rapid AST system on a collection of 197 fully characterized carbapenem-resistant Enterobacterales, including 177 carbapenemase producers (CPE) spiked in blood culture bottles. The clinical categorization based on the Minimal Inhibitory Concentration (MIC) determination of eighteen antimicrobial molecules was compared to the clinical categorization based on the disk diffusion assay as a reference.

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We examined the emergence and characteristics of oxacillinase-484-producing Enterobacterales in France during 2012-2023. Genomic analysis identified 2 predominant sequence types in Escherichia coli: ST410 and ST1722. Plasmid analysis revealed that bla genes were carried mostly on an IncX3-type plasmid associated with genetic elements including insertion sequences IS3000 and ISKpn19.

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Objectives: This study described OXA-1186, a novel carbapenemase related to OXA-198 carbapenemase and produced by a clinical isolate of Citrobacter freundii.

Methods: WGS was used to characterize the resistome, virulome and plasmid types of the C. freundii 315C8 isolate and to reconstruct the blaOXA-1186-carrying plasmid.

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OXA-244, an R214G variant of OXA-48, is silently spreading worldwide likely because of difficulties in detection using classical screening media. Here, we characterized two clinical isolates of and that displayed reduced susceptibility to carbapenems but were lacking significant carbapenemase activity as revealed by negative Carba NP test results. However, positive test results were seen for OXA-48-like enzymes by lateral flow immunoassays.

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We characterized a collection of IMI-like-producing Enterobacter spp. isolates (n = 112) in France. The main clone corresponded to IMI-1-producing sequence type 820 E.

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Article Synopsis
  • * Researchers analyzed 275 isolates from various countries using genomic techniques and found three main groups along with a proposed modified taxonomy for the genus.
  • * The findings suggest significant genetic diversity among Morganella spp and highlight the importance of monitoring these pathogens' resistance mechanisms for better treatment options.
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OXA-48 has rapidly disseminated worldwide and become one of the most common carbapenemases in many countries with more than 45 variants reported with, in some cases, significant differences in their hydrolysis profiles. The R214 residue, located in the ß5-ß6 loop, is crucial for the carbapenemase activity, as it stabilizes carbapenems in the active site and maintains the shape of the active site through interactions with D159. In this study, we have characterized a novel variant of OXA-48, OXA-933 with a single D159N change.

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Article Synopsis
  • From 2019 to 2022, the French NRC identified 25 metallo-β-lactamase-producing isolates of sequence type (ST)1740, all originating from the Lyon area, prompting further analysis on their spread and genetic evolution.
  • The study involved demographic data collection, genomic sequencing, and investigation of clonal relationships, revealing that the isolates were closely related with minimal genetic variation (≤ 27 SNPs), indicating a clonal dissemination.
  • The outbreak was tied to a specific clone that not only possessed a chromosome-encoded NDM-1 gene but also acquired plasmids for other resistance mechanisms, highlighting the need for comprehensive epidemiological and environmental investigations alongside microbiological studies.
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Bacterial evolution is affected by mobile genetic elements like phages and conjugative plasmids, offering new adaptive traits while incurring fitness costs. Their infection is affected by the bacterial capsule. Yet, its importance has been difficult to quantify because of the high diversity of confounding mechanisms in bacterial genomes such as anti-viral systems and surface receptor modifications.

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Background: Florida International University Herbert Wertheim College of Medicine (FIU-HWCOM) participated in the AAMC Core Entrustable Professional Activities (EPA) implementation pilot. Entrustment decision processes based on data from workplace-based assessments (WBAs) were piloted. Outcomes illustrated challenges including variability across EPAs with regards to learner level alignment and feasibility of data collection in the form of WBAs.

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Objectives: The early identification of carbapenemase-producing Enterobacterales (CPE) is required to prevent their spread and initiate proper therapy. Accordingly, it is crucial to develop efficient algorithms using susceptibility testing results to discriminate non-carbapenemase producers (non-CPE) from those that require complementary tests. In 2022, to adapt its recommendations to the evolution of CPE epidemiology (increased prevalence of OXA-244 producers), the Antibiogram Committee of the French Society of Microbiology (CA-SFM) proposed a new algorithm for the screening of CPE.

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Article Synopsis
  • * A study identified 37 clinical cases of NDM-14-producing bacteria using whole genome sequencing and found that they all belonged to sequence type ST147.
  • * The NDM-14 clone has a high mutation rate and is resistant to most antimicrobials, emphasizing the need for vigilant surveillance in healthcare settings to control its spread.
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The emergence of carbapenemase producers in Enterobacterales mostly involves , , and complex species. However, in France, we observed the emergence and the rapid dissemination of carbapenemase in spp. In this study, we demonstrated that a wide variety of carbapenemases is produced by many different species of spp.

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  • Researchers identified a new strain of bacteria in France called 13A297, part of the ST25 clone, which shows high resistance to β-lactam antibiotics, including cefiderocol.
  • Whole genome sequencing revealed a large plasmid carrying resistance genes, and when introduced into other bacterial strains, significantly increased their cefiderocol resistance.
  • Studies showed that a specific change in the NDM-9 enzyme improves its binding and efficiency against cefiderocol, underscoring the importance of residue 152 for antibiotic resistance.
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Article Synopsis
  • Cefiderocol resistance is becoming more common in Enterobacterales that produce New Delhi metallo-β-lactamase.
  • Research on Escherichia coli sequence type 361 shows mutations that contribute to this resistance in France.
  • Ongoing genomic monitoring of carbapenem-resistant Enterobacterales is necessary to better understand the spread of cefiderocol-resistant E. coli in Europe.
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Piperacillin-tazobactam resistance (P/T-R) is increasingly reported among Escherichia coli isolates. Although in vitro experiments have suggested that bla gene plays a key role in the P/T-R acquisition, no clinical in vivo study has yet confirmed the role of bla or other genes. Therefore, we aimed to identify the mechanisms underlying P/T-R by following up patients with E.

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β-Lactams are among the most prescribed antibiotics worldwide, mainly due to their weak toxicity and good efficacy [...

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Background And Objectives: Successful clerkship directors (CDs) must exhibit a variety of leadership, administrative, educational, and interpersonal skills. This study investigates the professional development needs for family medicine CDs to be successful in their role, in relation to career stage, institutional support, and needed resources.

Methods: A cross-sectional survey of CDs at qualifying United States and Canadian medical schools was performed between April 29, 2021 and May 28, 2021.

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