AcrAB Efflux Pump Plays a Crucial Role in Bile Salts Resistance and Pathogenesis of .

Bile salts possess innate antibacterial properties and can cause significant damage to bacteria. To survive in the mammalian gut, has developed mechanisms to tolerate bile salts; however, the specific mechanisms remain unclear. Transposon library screening revealed that the efflux pump AcrAB is involved in bile salt resistance.

Exploring transition states of protein conformational changes via out-of-distribution detection in the hyperspherical latent space.

Identifying transitional states is crucial for understanding protein conformational changes that underlie numerous biological processes. Markov state models (MSMs), built from Molecular Dynamics (MD) simulations, capture these dynamics through transitions among metastable conformational states, and have demonstrated success in studying protein conformational changes. However, MSMs face challenges in identifying transition states, as they partition MD conformations into discrete metastable states (or free energy minima), lacking description of transition states located at the free energy barriers.

Perspectives on emerging dual carbon fiber batteries: advantages, challenges and prospects.

This perspective article describes a new dual carbon fiber battery, where both the cathode and anode are made of carbon fiber. The dual carbon fiber battery combines the advantages of carbon fiber and dual graphite batteries, including a higher working potential compared to lithium-ion batteries, a high areal capacity, and easy access due to the mature manufacturing technology of carbon fibers. In this article, we discuss the mechanism, current status and potential application areas of dual carbon fiber batteries.

DNA Logical Device Combining an Entropy-Driven Catalytic Amplification Strategy for the Simultaneous Detection of Exosomal Multiplex miRNAs In Situ.

Exosomal miRNAs are considered promising biomarkers for cancer diagnosis, but their accuracy is severely compromised by the low content of miRNAs and the large amount of exosomal miRNAs released from normal cells. Here, we presented a dual-specific miRNA's logical recognition triggered by an entropy-driven catalysis (EDC)-enhanced system in exosomes for accurate detection of liver cancer-cell-derived exosomal miR-21 and miR-122. Taking advantage of the accurate analytical performance of the logic device, the excellent membrane penetration of gold nanoparticles, and the outstanding amplification ability of the EDC reaction, this method exhibits high sensitivity and selectivity for the detection of tumor-derived exosomal miRNAs in situ.

Spatiotemporal control of DNAzyme activity for fluorescent imaging of telomerase RNA in living cells.

Background: Human telomerase is a ribonucleoprotein complex that includes proteins and human telomerase RNA (hTR). Emerging evidence suggested that the expression level of hTR was high related with the development of tumor, so it is important to accurately detect the content of hTR. Optical control of DNAzyme activity shows a promising strategy for precise biosensing, biomedical imaging and modulation of biological processes.

GraphVAMPnets for uncovering slow collective variables of self-assembly dynamics.

Uncovering slow collective variables (CVs) of self-assembly dynamics is important to elucidate its numerous kinetic assembly pathways and drive the design of novel structures for advanced materials through the bottom-up approach. However, identifying the CVs for self-assembly presents several challenges. First, self-assembly systems often consist of identical monomers, and the feature representations should be invariant to permutations and rotational symmetries.

An Efficient Path Classification Algorithm Based on Variational Autoencoder to Identify Metastable Path Channels for Complex Conformational Changes.

Conformational changes (i.e., dynamic transitions between pairs of conformational states) play important roles in many chemical and biological processes.

PAS Domain-Containing Chemoreceptors Influence the Signal Sensing and Intestinal Colonization of .

Bacterial chemotaxis is the phenomenon in which bacteria migrate toward a more favorable niche in response to chemical cues in the environment. The methyl-accepting chemotaxis proteins (MCPs) are the principal sensory receptors of the bacterial chemotaxis system. Aerotaxis is a special form of chemotaxis in which oxygen serves as the signaling molecule; the process is dependent on the aerotaxis receptors (Aer) containing the Per-Arnt-Sim (PAS) domain.

DNA Dendrimer-Based Directed 3D Walking Nanomachine for the Sensitive Detection and Intracellular Imaging of miRNA.

Taking advantage of the remarkable processivity and membrane penetrability, the gold nanoparticle (AuNP)-based three-dimensional (3D) DNA walking nanomachine has induced tremendous promise in molecular diagnostics and cancer therapy, whereas the executive ability of this nanomachine was eventually limited because of the disordered assembly between the walker and the track. Therefore, we developed a well-directed 3D DNA walking nanomachine by employing a DNA dendrimer as the track for intracellular imaging with high directionality and controllability. The nanomachine was constructed on a DNA dendrimer decorated with a substrate strand serving as the DNA track and a DNAzyme restrained by a locking strand as the walker.

Symmetrical indoor visible light layout optimized by a modified grey wolf algorithm.

The indoor visible light communication system's LED layout and power factor affect the uniformity of the received power. To reduce the mean square error (MSE) of received power, a symmetrical optimization strategy based on the modified grey wolf optimization algorithm (mGWO) is proposed and applied in the square, rectangular, and circular rooms with different numbers of LED arrays. The received power uniformity, SNR uniformity, bit error rate, and channel capacity of the optimized layout with the proposed method are improved compared to the classical layout.

Impact of atmospheric thermodynamic structures and aerosol radiation feedback on winter regional persistent heavy particulate pollution in the Sichuan-Chongqing region, China.

Potential relationships among heavy air pollution, weather conditions, and meteorological effects are unclear and require further investigation, especially for areas with complex terrains, such as the Sichuan Basin (SCB), one of the most polluted regions in China. In this study, air pollution in the SCB was examined and 18 regional persistent heavy pollution events (RPHEs) were identified for the winters of 2014-2018. The average persistent period of the RPHEs was 8.

Regorafenib combined with transarterial chemoembolization for unresectable hepatocellular carcinoma: a real-world study.

Background: The benefits and tolerability of transarterial chemoembolization (TACE) combined with regorafenib as a second-line therapy has not been reported for unresectable hepatocellular carcinoma (HCC). This study aimed to explore the benefits and tolerability of TACE combined with second-line regorafenib in patients with unresectable advanced HCC and failure to first-line treatment.

Methods: This was a multicenter retrospective study of patients with progression after first-line sorafenib and/or lenvatinib between 01/2019 and 04/2020 at four tertiary hospitals in China.

Hydrodynamics and water quality of the Hongze Lake in response to human activities.

The hydrodynamics and water quality of a lake in response to human activities is an important yet poorly understood issue. In this study, the responses of flow field, water level, and water quality of the Hongze Lake to changes in land use, project operation, and pollution accident were investigated using the 2D hydrodynamic model, water quality model, and hydrological model. The results show that project operations have more significant effects on the hydrodynamics and water quality of the Hongze Lake than changes in land use.

Composite prescribed performance control of small unmanned aerial vehicles using modified nonlinear disturbance observer.

An integrated control scheme composed of modified nonlinear disturbance observer and predefined-time prescribed performance control is proposed to address the high-accuracy tracking problem of the unmanned aerial vehicles (UAVs) subjected to external mismatched disturbances. By utilizing the transformation technique that incorporates the desired performance characteristic and the newly predefined-time performance function, the original controlled system can be transformed into a new unconstrained one to achieve the fixed-time convergence of the tracking error. Then, by virtual of the transformed unconstrained system, a modified nonlinear disturbance observer (NDO) which possesses fast convergence speed is established to estimate the external disturbance.

Advances in Artificial Layers for Stable Lithium Metal Anodes.

Lithium (Li) metal is considered as the most promising anode material for rechargeable high-energy batteries. Nevertheless, the practical implement of Li anodes is significantly hindered by the growth of Li dendrites, which can cause severe safety issues. To inhibit the formation of Li dendrites, coating an artificial layer on the Li metal anode has been shown to be a facile and effective approach.

Optimal coordination-site exposure engineering in porous platinum for outstanding oxygen reduction performance.

In this study, we report that optimal coordination-site exposure engineering in porous platinum brings ultrahigh activity and durability for the fuel cell oxygen reduction reaction (ORR). The porous platinum with numerous grain boundaries (GBP-Pt) consisting of 3 nm crystals exhibits 7 times higher ORR activity than commercial Pt. For fuel-cell measurements, the GBP-Pt catalyst based MEA exhibits high power density (1.

Effects of group size and rank on mother-infant relationships and reproductive success in rhesus macaques (Macaca mulatta).

In the present study, we compared mother-infant relationships in 57 mother-infant dyads residing in two wild, semi-provisioned (22 mother-infant dyads in 2014, 35 dyads in 2015) groups of rhesus macaques (Macaca mulatta) in the Nanwan Nature Reserve for Rhesus Macaques, Hainan, China. We also compared reproductive success between these two groups. The ecology and provisioning regime for each group was similar.

Coating with spermine-pullulan polymer enhances adenoviral transduction of mesenchymal stem cells.

Mesenchymal stem cells (MSCs) are adult stem cells with multilineage potential, which makes them attractive tools for regenerative medicine applications. Efficient gene transfer into MSCs is essential not only for basic research in developmental biology but also for therapeutic applications involving gene-modification in regenerative medicine. Adenovirus vectors (Advs) can efficiently and transiently introduce an exogenous gene into many cell types via their primary receptors, the coxsackievirus and adenovirus receptors, but not into MSCs, which are deficient in coxsackievirus and adenovirus receptors expression.

Serum soluble mesothelin-related peptide (SMRP): a potential diagnostic and monitoring marker for epithelial ovarian cancer.

Purpose: To explore the potential and diagnostic performance of soluble mesothelin-related peptide (SMRP) as a tumor marker for epithelial ovarian cancer (EOC).

Methods: Sera were obtained from 78 EOC patients, 84 benign ovarian tumor patients, 58 healthy volunteers, and 22/78 EOC patients 1 week after surgery. SMRP levels and diagnostic performance were assessed by ELISA using the MESOMARK kit.