Publications by authors named "Biswanath Chowdhury"

Article Synopsis
  • * A new algorithm called OM2BFB was developed to effectively detect BFB amplifications using optical genome maps, achieving high accuracy and recall in identifying these events across various cancer models.
  • * BFB amplification tends to occur more in certain cancers (like cervical and lung) and results in lower variability in gene expression compared to ecDNA amplifications, which may indicate different patterns of treatment resistance and offer
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The atmospheric concentrations of volatile organic compounds (VOCs) generated by surface slicks during an oil spill have not been extensively studied. We modeled oil transport and fate, air emissions, and atmospheric dispersion of VOCs from a hypothetical deepwater well blowout in De Soto Canyon of the Gulf of Mexico assuming no intervention and use of SubSea Dispersant Injection (SSDI) at the source during three week-long periods representing different atmospheric mixing conditions. Spatially varying time histories of atmospheric VOCs within ~2 km from the release site were estimated.

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Background: Detection of important functional and/or structural elements and identification of their positions in a large eukaryotic genomic sequence are an active research area. Gene is an important functional and structural unit of DNA. The computation of gene prediction is, therefore, very essential for detailed genome annotation.

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Sequence alignment is an active research area in the field of bioinformatics. It is also a crucial task as it guides many other tasks like phylogenetic analysis, function, and/or structure prediction of biological macromolecules like DNA, RNA, and Protein. Proteins are the building blocks of every living organism.

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Unlabelled: The U.S. Environmental Protection Agency (EPA) short-distance dispersion model, AERMOD, has been shown to overpredict by a factor of as much as 10 when compared with observed concentrations from continuous releases at the Oak Ridge, TN (OR), and Idaho Falls, ID (IF), field experiments during stable periods when wind speeds often dropped below 1 m/sec.

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