Publications by authors named "Biere A"

Background: Entomopathogenic fungi are increasingly used as bio-inoculants to enhance crop growth and resistance. When applied to rhizosphere soil, they interact with resident soil microbes, which can affect their ability to colonize and induce resistance in plants as well as modify the structure of the resident soil microbiome, either directly through interactions in the rhizosphere or indirectly, mediated by the plant. The extent to which such direct versus indirect interactions between bio-inoculants and soil microbes impact microbe-induced resistance in crops remains unclear.

View Article and Find Full Text PDF

Unlabelled: Automated reasoning techniques based on computer algebra have seen renewed interest in recent years and are for example heavily used in formal verification of arithmetic circuits. However, the verification process might contain errors. Generating and checking proof certificates is important to increase the trust in automated reasoning tools.

View Article and Find Full Text PDF

Beneficial microbes induce resistance in plants (MIR), imposing both lethal and sublethal effects on herbivorous insects. We argue that herbivores surviving MIR carry metabolic and immunological imprints of MIR with cascading effects across food webs. We propose that incorporating such cascading effects will strongly enhance the current MIR research framework.

View Article and Find Full Text PDF

Direct targeting of alpha-synuclein (ASYN) has emerged as a disease-modifying strategy for Parkinson's disease and other synucleinopathies which is being approached using both small molecule compounds and ASYN-targeted biologics. Minzasolmin (UCB0599) is an orally bioavailable and brain-penetrant small molecule ASYN misfolding inhibitor in clinical development as a disease-modifying therapeutic for Parkinson's disease. Herein the results of preclinical evaluations of minzasolmin that formed the basis for subsequent clinical development are described.

View Article and Find Full Text PDF

Entomopathogenic fungi have been well exploited as biocontrol agents that can kill insects through direct contact. However, recent research has shown that they can also play an important role as plant endophytes, stimulating plant growth, and indirectly suppressing pest populations. In this study, we examined the indirect, plant-mediated, effects of a strain of entomopathogenic fungus, on plant growth and population growth of two-spotted spider mites () in tomato, using different inoculation methods (seed treatment, soil drenching and a combination of both).

View Article and Find Full Text PDF

Release from enemies can lead to rapid evolution in invasive plants, including reduced metabolic investment in defence. Conversely, reassociation with enemies leads to renewed evolution of defence, but the potential costs of this evolution are poorly documented. We report increased resistance of the invader Ambrosia artemisiifolia after reassociation with a coevolved specialist herbivore, and that this increase corresponds with reduced abiotic stress tolerance.

View Article and Find Full Text PDF

The physiological performance of organisms depends on their environmental context, resulting in performance-response curves along environmental gradients. Parasite performance-response curves are generally expected to be broader than those of their hosts due to shorter generation times and hence faster adaptation. However, certain environmental conditions may limit parasite performance more than that of the host, thereby providing an environmental refuge from disease.

View Article and Find Full Text PDF

Introduction: Fitness of plants is affected by their symbiotic interactions with arbuscular mycorrhizal fungi (AMF), and such effects are highly dependent on the environmental context.

Methods: In the current study, we inoculated the nursery shrub species with AMF species under contrasting levels of soil water and nutrients (diammonium phosphate fertilization), to assess their effects on plant growth, physiology and natural infestation by herbivores.

Results: Overall, plant biomass was synergistically enhanced by increasing soil water and soil nutrient levels.

View Article and Find Full Text PDF

Many specialist herbivores have evolved strategies to cope with plant defences, with gut microbiota potentially participating to such adaptations.In this study, we assessed whether the history of plant use (population origin) and microbiota may interact with plant defence adaptation.We tested whether microbiota enhance the performance of larvae on their host plant, and increase their ability to cope the defensive compounds, iridoid glycosides (IGs).

View Article and Find Full Text PDF

This special issue of Software Tools for Technology Transfer comprises extended versions of selected papers from the 26th edition of the International Conference on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2020). The focus of this conference series is tools and algorithms for the rigorous analysis of software and hardware systems, and the papers in this special cover the spectrum of current work in this field.

View Article and Find Full Text PDF

Background: Parkinson's disease (PD) and its progression are thought to be caused and driven by misfolding of α-synuclein (ASYN). UCB0599 is an oral, small-molecule inhibitor of ASYN misfolding, aimed at slowing disease progression.

Objective: The aim was to investigate safety/tolerability and pharmacokinetics (PK) of single and multiple doses of UCB0599.

View Article and Find Full Text PDF

Beneficial soil microbes can enhance plant growth and defense, but the extent to which this occurs depends on the availability of resources, such as water and nutrients. However, relatively little is known about the role of light quality, which is altered during shading, resulting a low red: far-red ratio (R:FR) of light. We examined how low R:FR light influences arbuscular mycorrhizal fungus (AMF)-mediated changes in plant growth and defense using (tomato) and the insect herbivore .

View Article and Find Full Text PDF

Bounded variable elimination is one of the most important preprocessing techniques in SAT solving. It benefits from discovering functional dependencies in the form of definitions encoded in the CNF. While the common approach pioneered in SatELite relies on syntactic pattern matching, our new approach uses cores produced by an embedded SAT solver, Kitten.

View Article and Find Full Text PDF

Increasing demands to reduce fertilizer and pesticide input in agriculture has triggered interest in arbuscular mycorrhizal fungi (AMF) that can enhance plant growth and confer mycorrhiza-induced resistance (MIR). MIR can be based on a variety of mechanisms, including induction of defense compounds, and sensitization of the plant's immune system (priming) for enhanced defense against later arriving pests or pathogens signaled through jasmonic acid (JA). However, growth and resistance benefits of AMF highly depend on environmental conditions.

View Article and Find Full Text PDF
Article Synopsis
  • Recent research indicates that invasive earthworms can negatively impact the defense mechanisms of native plants against herbivores and pathogens by altering soil chemistry.
  • An observational study revealed that these earthworms increased leaf damage from chewing insects and reduced certain chemical defenses in poplar saplings.
  • Experimental results confirmed reduced leaf defense compounds and increased susceptibility to fungal infections, highlighting the potential risk invasive earthworms pose to tree survival and ecosystem health.
View Article and Find Full Text PDF

Verifying arithmetic circuits and most prominently multiplier circuits is an important problem which in practice still requires substantial manual effort. The currently most effective approach uses polynomial reasoning over pseudo boolean polynomials. In this approach a word-level specification is reduced by a Gröbner basis which is implied by the gate-level representation of the circuit.

View Article and Find Full Text PDF

Rapid human population growth and associated urbanization lead to increased artificial illumination of the environment. By changing the natural light-dark cycle, artificial lighting can affect the functioning of natural ecosystems. Many plants rely on insects in order to reproduce but these insects are known to be disturbed by artificial light.

View Article and Find Full Text PDF

Plant-microbe-arthropod (PMA) three-way interactions have important implications for plant health. However, our poor understanding of the underlying regulatory mechanisms hampers their biotechnological applications. To this end, we searched for potential common patterns in plant responses regarding taxonomic groups or lifestyles.

View Article and Find Full Text PDF

We introduce proof systems for propositional logic that admit short proofs of hard formulas as well as the succinct expression of most techniques used by modern SAT solvers. Our proof systems allow the derivation of clauses that are not necessarily implied, but which are redundant in the sense that their addition preserves satisfiability. To guarantee that these added clauses are redundant, we consider various efficiently decidable redundancy criteria which we obtain by first characterizing clause redundancy in terms of a semantic implication relationship and then restricting this relationship so that it becomes decidable in polynomial time.

View Article and Find Full Text PDF
Article Synopsis
  • The study looked at how heavy rain affects caterpillars that eat black mustard plants.
  • Two types of caterpillars were tested to see how they survive and grow when exposed to different rain patterns.
  • The results showed that heavy rain hurts one caterpillar type more than the other, making them take longer to grow and possibly affecting the whole food chain.
View Article and Find Full Text PDF

Research on mycorrhizal interactions has traditionally developed into separate disciplines addressing different organizational levels. This separation has led to an incomplete understanding of mycorrhizal functioning. Integration of mycorrhiza research at different scales is needed to understand the mechanisms underlying the context dependency of mycorrhizal associations, and to use mycorrhizae for solving environmental issues.

View Article and Find Full Text PDF

Plants actively interact with antagonists and beneficial organisms occurring in the above- and belowground domains of terrestrial ecosystems. In the past decade, studies have focused on the role of plant-soil feedbacks (PSF) in a broad range of ecological processes. However, PSF and its legacy effects on plant defense traits, such as induction of defense-related genes and production of defensive secondary metabolites, have not received much attention.

View Article and Find Full Text PDF
Article Synopsis
  • Wind is important for plants and insect interactions, but it's not usually studied.
  • Researchers tested how wind affects the growth and feeding of two caterpillars on a type of plant called Brassica nigra.
  • They found that wind can change how long it takes for caterpillars to grow and how big they get, and it also influences how birds catch them.
View Article and Find Full Text PDF
Article Synopsis
  • DNA methylation is a way that genes can change how they work without changing the actual DNA, and these changes can sometimes be passed down to kids.
  • Scientists studied dandelions to see how stress like drought or a chemical called salicylic acid affected their DNA methylation and if those changes were inherited by the next generations.
  • The dandelions showed that sometimes stress caused real changes in their DNA that could be passed down, but mostly these changes were random and not focused on particular parts of the DNA.
View Article and Find Full Text PDF