Publications by authors named "Bhowmick P"

Article Synopsis
  • Early seedling vigour (ESV) is crucial for rice cultivation, particularly in direct-seeded systems, and the aus varietal group shows high ESV.
  • A study of 181 aus accessions revealed significant genetic variation in ESV traits, and the vegetative vigour was closely linked to overall plant performance.
  • Genome-wide association studies identified 14 significant QTLs associated with ESV, including novel QTLs, and pinpointed candidate genes that may enhance seedling vigour and grain yield in breeding programs.
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Diabetic wounds have become a serious global health concern, with a growing number of patients each year. Diabetic altered wound healing physiology, as well as resulting complications, make therapy difficult. Hence, diabetic wound healing necessitates a multidisciplinary strategy.

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Direct-seeded rice (DSR) is gaining popularity among farmers due to its environmentally safe and resource-efficient production system. However, managing the rice root-knot nematode (RRKN), , remains a major challenge in DSR cultivation. Developing genetic resistance is a pragmatic and effective approach compared to using hazardous pesticides.

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Drug delivery through the blood-brain barrier (BBB) is one of the key challenges in the modern era of medicine due to the highly semipermeable characteristics of BBB that restrict the entry of various drugs into the central nervous system (CNS) for the management of brain disorders. Drugs can be easily incorporated into carbon nanocarriers that can cross the bloodbrain barrier. Numerous nanocarriers have been developed, including polymeric nanoparticles, carbon nanoparticles, lipid-based nanoparticles, etc.

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Mouse is the mammalian model of choice to study human health and disease due to its size, ease of breeding and the natural occurrence of conditions mimicking human pathology. Here we design and validate multiple reaction monitoring mass spectrometry (MRM-MS) assays for quantitation of 2118 unique proteins in 20 murine tissues and organs. We provide open access to technical aspects of these assays to enable their implementation in other laboratories, and demonstrate their suitability for proteomic profiling in mice by measuring normal protein abundances in tissues from three mouse strains: C57BL/6NCrl, NOD/SCID, and BALB/cAnNCrl.

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Bakanae disease caused by is an emerging disease of rice causing losses in all rice-growing regions around the world. A BCF population was developed by backcrossing the recurrent parent Pusa Basmati 1121 (PB1121) with the recombinant inbred line RIL28, which harbors a major quantitative trait locus (QTL) governing resistance to bakanae, . MassARRAY-based single-nucleotide polymorphism (SNP) assays targeting the genomic region of helped in fine mapping the QTL to a region of 130 kb between the SNP markers and using 24 recombinants.

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Pusa Basmati 1509 (PB1509) is one of the major foreign-exchange-earning varieties of Basmati rice; it is semi-dwarf and early maturing with exceptional cooking quality and strong aroma. However, it is highly susceptible to various biotic stresses including bacterial blight and blast. Therefore, bacterial blight resistance genes, namely, + and , and fungal blast resistance genes + and were incorporated into the genetic background of recurrent parent (RP) PB1509 using donor parents, namely, Pusa Basmati 1718 (PB1718), Pusa 1927 (P1927), Pusa 1929 (P1929) and Tetep, respectively.

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Article Synopsis
  • Betel quid chewing and tobacco use are major risk factors for oral and esophageal cancers, with chronic exposure potentially causing harmful transformations in oral cells.
  • The carcinogenic effects are primarily linked to mutagenic mechanisms, including nitrosation and the presence of alkylating agents, which lead to DNA damage and genetic changes.
  • Long-term use of betel quid and tobacco results in the accumulation of genetic and epigenetic alterations that contribute to the development of head and neck cancers, though the exact molecular processes remain largely unclear.
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In the scenario of global climate change, understanding how plants respond to drought is critical for developing future crops that face restricted water resources. This present study focuses on the role of WRKY transcription factors on drought tolerance in tomato, L., which is a significant vegetable crop.

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Timor-Leste, a small, mountainous half-island nation which shares a land border with Indonesia and which is 550 km from Australia, has a population of 1.3 million and achieved independence for the second time in 2002. It is one of the poorest nations in Asia.

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Background: Basmati is a speciality segment in the rice genepool characterised by explicit grain quality. For the want of suitable populations, genome-wide association study (GWAS) in Basmati rice has not been attempted.

Materials: To address this gap, we have performed a GWAS on a panel of 172 elite Basmati multiparent population comprising of potential restorers and maintainers.

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Background: Antioxidants detain the development and proliferation of various non-communicable diseases (NCDs). γ-oryzanol, a group of steryl ferulates and caffeates, is a major antioxidant present in rice grain with proven health benefits. The present study evaluated the distribution and dynamics of γ-oryzanol and its components in spatial and temporal scales and also delineated the effect of processing and cooking on its retention.

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Cucumber is a model plant for studying parthenocarpy with abundant slicing- and pickling-type germplasm. This study was undertaken to understand the role of the important cytokines (CKs), auxin (AUX) and gibberellin (GA) biosynthesis and degradation genes for the induction of parthenocarpy in slicing and pickling germplasm. Two genotypes of gynoecious parthenocarpic cucumber, PPC-6 and DG-8, along with an MABC-derived gynoecious non-parthenocarpic line, IMPU-1, were evaluated in this study.

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Article Synopsis
  • Basmati rice is characterized by its long grains, unique cooking qualities, and strong aroma, making the development of high-yielding varieties a significant challenge.
  • The study involved creating a population of recombinant inbred lines (RIL) from two rice varieties and revealed correlations between grain dimensions, leading to the identification of four major genomic regions linked to milled and cooked kernel lengths.
  • Among these, two QTLs were previously known while two were novel, with one genomic region containing 18 gene models that may play a role in the traits studied, including a new QTL related to kernel elongation ratio.
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The exploitation of heterosis through intersubspecific hybridisation between and has been a major breeding target in rice, but is marred by the cross incompatibility between the genomes. Wide compatibility (WC) is a triallelic system at the locus on chromosome 6 that ensures the specificity of hybridisation within and between and The allele that favours intercrossing is sparsely distributed in the rice gene pool and therefore warrants identification of diverse WC sources to develop superior intersubspecific hybrids. In this study, we have identified several novel WC sources through the marker-assisted screening of a large set of 950 rice genotypes.

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Temperature rise predicted for the future will severely affect rice productivity because the crop is highly sensitive to heat stress at the reproductive stage. Breeding tolerant varieties is an economically viable option to combat heat stress, for which the knowledge of target genomic regions associated with the reproductive stage heat stress tolerance (RSHT) is essential. A set of 192 rice genotypes of diverse origins were evaluated under natural field conditions through staggered sowings for RSHT using two surrogate traits, spikelet fertility and grain yield, which showed significant reduction under heat stress.

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  • Research investigated the genetic variability of aroma genes in indigenous and exotic aromatic rice, identifying two main alleles and four functional polymorphisms associated with aroma traits.
  • Most genotypes (71.8%) possess FP1, linked to both key alleles, while a smaller percentage have FP2 or FP3; a notable 12.2% lack any of the targeted aroma alleles.
  • Results indicated that specific alleles correspond to higher aromatic qualities, with some aromatic lines showing lower levels of the key aroma compound, 2-Acetyl-1-Pyrroline (2AP), suggesting other genes may also influence aroma.
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Sheath blight caused by necrotrophic fungus Kühn is one of the most serious diseases of rice. Use of high yielding semi dwarf cultivars with dense planting and high dose of nitrogenous fertilizers accentuates the incidence of sheath blight in rice. Its diverse host range and ability to remain dormant under unfavorable conditions make the pathogen more difficult to manage.

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Abating the approaching yield plateau in rice requires taking advantage of potential technologies that requires knowledge on genetic diversity. Hybrid breeding, particularly in rice, requires the recruitment of large genetic variability from outside because the available genetic diversity of the cultivated pool has already been utilized to a great extent. In this study, we examined an assembly of 200 tropical lines collected worldwide for population genetic structure and variability in yield-associated traits.

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Reproductive stage drought stress (RSDS) is a major challenge in rice production worldwide. Cultivar development with drought tolerance has been slow due to the lack of precise high throughput phenotyping tools to quantify drought stress-induced effects. Most of the available techniques are based on destructive sampling and do not assess the progress of the plant's response to drought.

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Rapid deterioration of rice bran due to the LOX3 enzyme catalysed oxidation of PUFA is the major bottleneck for its utilization in various downstream applications. In the present study, we have identified a set of nine novel LOX3-null rice accessions carrying a deletion of C residue in the exon2 causing a frameshift mutation resulting in a truncated non-functional LOX3 protein. Our study, further manifested the predominance of C deletion based LOX3-null allele, named lox3-b, in the aromatic rice germplasm particularly in the Indian Basmati rice group.

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Increasing rice production is quintessential to the task of sustaining global food security, as a majority of the global population is dependent on rice as its staple dietary cereal. Among the various constraints affecting rice production, reproductive stage drought stress (RSDS) is a major challenge, due to its direct impact on grain yield. Several quantitative trait loci (QTLs) conferring RSDS tolerance have been identified in rice, and is one of the major QTLs reported.

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Article Synopsis
  • Rice germplasm is a valuable source for identifying genes that provide salt tolerance in rice, with a study evaluating 96 accessions revealing significant variations in salt tolerance traits.
  • Eleven accessions were highlighted for their strong salt tolerance at the seedling stage, and a genome-wide association study (GWAS) uncovered 23 marker-trait associations (MTAs) distributed across multiple rice chromosomes, explaining a notable portion of the phenotypic variance.
  • Additionally, 21 of these MTAs coincide with known quantitative trait loci (QTLs), while novel MTAs were also identified, leading to the discovery of potential candidate genes that can be utilized in molecular breeding to enhance both salinity tolerance and yield in rice.
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Precise multiplexed quantification of proteins in biological samples can be achieved by targeted proteomics using multiple or parallel reaction monitoring (MRM/PRM). Combined with internal standards, the method achieves very good repeatability and reproducibility enabling excellent protein quantification and allowing longitudinal and cohort studies. A laborious part of performing such experiments lies in the preparation steps dedicated to the development and validation of individual protein assays.

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Unlabelled: MotivationLaboratory mouse is the most used animal model in biological research, largely due to its high conserved synteny with human. Researchers use mice to answer various questions ranging from determining a pathological effect of knocked out/in gene to understanding drug metabolism. Our group developed >5000 quantitative targeted proteomics assays for 20 mouse tissues and determined the concentration ranges of a total of >1600 proteins using heavy labeled internal standards.

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