Publications by authors named "Basak N"

Sex is an important covariate in all genetic and epigenetic research due to its role in the incidence, progression and outcome of many phenotypic characteristics and human diseases. Amyotrophic lateral sclerosis (ALS) is a motor neuron disease with a sex bias towards higher incidence in males. Here, we report for the first time a blood-based epigenome-wide association study meta-analysis in 9274 individuals after stringent quality control (5529 males and 3975 females).

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Waste-centred-bioenergy generation have been garnering interest over the years due to environmental impact presented by fossil fuels. Waste generation is an unavoidable consequence of urbanization and population growth. Sustainable waste management techniques that are long term and environmentally benign are required to achieve sustainable development.

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  • The study focuses on identifying valid digital-motor outcome measures using wearable sensors for spastic paraplegia type 7 (SPG7), a common spastic ataxia, aiming to reflect health aspects relevant to patients in early disease stages and suitable for multicenter trials.
  • Gait analysis was performed in 65 SPG7 patients and 50 healthy controls, where 18 out of 30 analyzed gait measures effectively discriminated between the two groups, even in mild disease stages.
  • Key findings highlighted that specific spatiotemporal variability measures strongly correlate with functional mobility and overall disease severity, indicating their potential as sensitive outcome measures for future trials.
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  • Human genetics research has made a lot of progress in finding out what causes diseases over the last ten years, thanks to sharing data and working together.
  • The GENESIS platform helps scientists who may not know a lot about bioinformatics to analyze genetics data and discover new disease genes.
  • With over 20,000 datasets from rare disease patients, GENESIS has contributed to discovering more than 100 new genes and helped solve many cases for patients with rare diseases.
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Objective: Neurofilament heavy-chain gene (NEFH) variants are associated with multiple neurodegenerative diseases, however, their relationship with ALS has not been robustly explored. Still, NEFH is commonly included in genetic screening panels worldwide. We therefore aimed to determine if NEFH variants modify ALS risk.

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Exposure to electromagnetic fields causes a variety of health problems in living systems. We investigated EMF pollution in Şanlıurfa city center and also investigated anxiety-depression symptoms in individuals (18-40 years old) exposed to this pollution. For this purpose, electric field and magnetic field measurements were taken at Electricity Distribution Center and 44 substations (for each transformer), at 0 points, 1 meter away, 2 meters away and the house/office closest to the transformer.

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The success of the sodic soil reclamation using elemental S (S°) depends on the population of the native S° oxidizers. Augmenting the native flora of the sodic soils with effective S° oxidizers can enhance the success of the sodic soil reclamation. Present study reports for the first time the S° oxidation potential of the Sphingomonas olei strain 20UP7 isolated from sodic soils with pH 9.

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The first high-protein rice variety of India, CR Dhan 310, developed at ICAR-NRRI, Cuttack is being selected for the study. It contains 10.1% protein in milled rice as compared to 6-7% protein content in the milled rice of any other normal variety.

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Solid tumors are dense three-dimensional (3D) multicellular structures that enable efficient receptor-ligand trans interactions via close cell-cell contact. Immunoglobulin-like transcript (ILT)2 and ILT4 are related immune-suppressive receptors that play a role in the inhibition of myeloid cells within the tumor microenvironment. The relative contribution of ILT2 and ILT4 to immune inhibition in the context of solid tumor tissue has not been fully explored.

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Dynamic interactions within the tumor micro-environment drive patient response to immune checkpoint inhibitors. Existing preclinical models lack true representation of this complexity. Using a Head and Neck cancer patient derived TruTumor histoculture platform, the response spectrum of 70 patients to anti-PD1 treatment is investigated in this study.

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RFC1 disease, caused by biallelic repeat expansion in RFC1, is clinically heterogeneous in terms of age of onset, disease progression and phenotype. We investigated the role of the repeat size in influencing clinical variables in RFC1 disease. We also assessed the presence and role of meiotic and somatic instability of the repeat.

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Article Synopsis
  • Intermediary metabolites, particularly fatty acids, significantly influence post-translational modifications of proteins, changing based on dietary states (fed vs. fasted).
  • The fluctuations in intracellular fatty acid levels provide essential cues for cellular energy production and protein modification, particularly fatty acylation.
  • Key signaling components, such as SIRT4, AMPK, and mTOR, in mitochondria, regulate the complex relationship between carbohydrate and lipid metabolism, affecting how proteins are modified at the cellular level.
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Thermal Power Plant generates FGD gypsum as by-product during coal combustion. This study evaluates the characterization (spectroscopic and elemental), potentially toxic elements (PTEs) distribution, and environmental risk assessment of FGD gypsum for safe and sustainable use in agriculture. The XRD and SEM analysis confirmed the dominance of crystalline CaSO·2HO in FGD gypsum.

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The present study was proposed with the idea to screen and isolate efficient low-density polyethylene (LDPE) degrading novel bacterial strains from the plastic-contaminated dumping site. The identification of the bacterial isolate was performed with the help of microbiological and molecular characterization approaches. The screening of the best isolate was performed based on its growth in Bushnell-Hass broth supplemented with LDPE sheets as the sole carbon source.

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This paper offers a thorough bibliometric review of the literature on municipal solid waste compost (MSWC), focusing on the past two decades. Using an extensive dataset of 827 documents, the research patterns are analyzed via the R-based Bibliometrix package, merging metadata from Web of Science and Scopus. The analysis reveals substantial global growth in MSWC research, with a particular surge in the last 20 years.

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Introduction: The perennial grass-legume cropping system benefits soil because of its high biomass turnover, cover cropping nature, and different foraging behaviors. We investigated the response of soil organic carbon (SOC) pools and their stock to organic and inorganic nutrient management in the Guinea grass and legume (cowpea-Egyptian clover) cropping system.

Methods: Depth-wise soil samples were collected after harvesting the Egyptian clover.

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  • The text discusses the increasing gene testing for amyotrophic lateral sclerosis (ALS), particularly for sporadic ALS (sALS), highlighting a lack of large studies on genetic variations associated with the disease.
  • It describes a research study that analyzed genetic data from over 6,000 sALS patients and over 2,400 controls to characterize genetic variability in 90 ALS-related genes using established criteria for interpretation.
  • The findings revealed that while some pathogenic variants were identified, a significant portion of the sALS patients had no detectable genetic clues, indicating the complexity of the genetic landscape of the disease.*
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Caveolin-1 and Caveolin-2 (CAV1 and CAV2) are proteins associated with intercellular neurotrophic signalling. There is converging evidence that CAV1 and CAV2 (CAV1/2) genes have a role in amyotrophic lateral sclerosis (ALS). Disease-associated variants have been identified within CAV1/2 enhancers, which reduce gene expression and lead to disruption of membrane lipid rafts.

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Unlabelled: The commercial significance of accurate and simple quantification of 2-Acetyl-1-pyrroline (2-AP) cannot be overstated. Present study was carried out to standardize a method for extraction and accurate quantitation of 2-AP from rice grain using GC-MS/MS equipped with HS-SPME auto sampler. The effect of sample quantity, addition of solvent, grinding process, sample particle size, head space parameters and SPME fiber incubation parameters, were optimized in the developed method.

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This case study aims to measure the level of acceptance of violence among women and couples and to reveal the level of acceptance within and outside the families of women who have participated in working life. The concepts of anger and violence, physical, sexual, psychological, emotional, and economic violence, which are the sub-components of violence, violence in dating, and marital relations are examined separately according to Feminism and Social Learning Theory approaches. The Working Group was formed by applying questionnaires to 50 participants from the cities of Kyrenia, Güzelyurt, Lefke, Nicosia, and Magusa and determining the 20 participants with the highest level of acceptance of violence.

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Background And Aims: Prevalence of type 2 diabetes has been rising rapidly especially in low- and middle-income countries. The purpose of this study is to analyze the prevalence of type 2 diabetes in 2011 and 2017-18, and the risk factors based on the Bangladesh Demographic and Health Surveys (BDHS).

Methods: The study comprised of data from the BDHS 2011 and the BDHS 2017-18 with 7565 (50.

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ZnSbOF crystallites were synthesized by a pH-regulated hydrothermal synthetic approach, while doping on ZnSbOF by KI was performed by the "incipient wetness impregnation technique." The effect of KI in ZnSbOF is found with the changes in morphology in the doped compound, i.e.

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