Publications by authors named "Barry E Kennedy"

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  • - Eczema (atopic dermatitis) is a skin condition with causes linked to genetics, immune issues, and environmental factors, making skin barrier dysfunction a key problem.
  • - Current treatments primarily involve emollients and topical medications like corticosteroids; the review highlights new advancements in using plant-based topical applications and their effectiveness.
  • - Studies show that herbal treatments improve symptoms of eczema, decrease inflammation markers, and may reduce side effects associated with conventional treatments by using innovative delivery systems like nanocarriers.
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  • - CD8 T cells are crucial for fighting viruses, and type I interferons quickly activate them after viral exposure, leading to changes in their behavior.
  • - The study reveals that exposure to reovirus activates naïve CD8 T cells within 24 hours, highlighting a previously overlooked role of these cells in the immune response.
  • - The activation of naïve CD8 T cells is dependent on a protein called STAT1 and is influenced by a metabolic process involving nicotinamide phosphoribosyl transferase (NAMPT), suggesting new insights into immune responses to viruses.
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  • - The study investigates how cancer cell energy metabolism, particularly NAD+ levels, influences the effectiveness of oncolytic viruses like reovirus in treating multiple myeloma.
  • - Researchers found that lower NAD+ levels, from inhibiting the enzyme NAMPT, made multiple myeloma cells more susceptible to reovirus-induced killing, especially in cells with active p53 and a preference for mitochondrial metabolism.
  • - The combination treatment of reovirus and NAD+ depletion led to significant mitochondrial dysfunction and cell death in specific myeloma cells, indicating that targeting NAD+ levels could enhance oncolytic virus therapies in multiple myeloma patients.
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  • Multiple myeloma is classified into two main types based on genomic alterations: hyperdiploidy and IgH translocations, assessed at diagnosis using FISH for risk stratification.
  • This study sequenced 26 genes in 76 multiple myeloma patients and found 255 mutations and 33 focal copy number variations, linking high-severity mutations to poorer patient outcomes.
  • Mutations identified were different from traditional FISH risk markers, allowing better risk classification, with some patients showing severe forms like plasma cell leukemia despite being initially classified as standard risk.
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  • The mitochondrial Ca uniporter (MCU) is crucial for axon survival and remyelination in multiple sclerosis (MS) by enhancing mitochondrial calcium uptake and ATP production in stressed areas.
  • MCU activity is hindered in MS due to respiratory chain deficits, which may lead to axon damage and hinder remyelination, as demonstrated in a study using MCU-deficient mice.
  • The study found that MCU deficiency resulted in worse clinical scores, more mitochondrial dysfunction, and increased signs of axonal damage and inflammation compared to control mice, suggesting that hindering MCU contributes to the progression of MS.
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Oncolytic viruses (OVs) represent a promising new class of cancer therapeutics and cause antitumor effects by two major mechanisms: (1) directly killing cancer cells in a process known as oncolysis, or (2) initiating a powerful antitumor immune response. Interestingly, energy metabolism, within either cancer cells or immune cells, plays a pivotal role in defining the outcome of OV-mediated antitumor effects. Following therapeutic administration, OVs must hijack host cell metabolic pathways to acquire building blocks such as nucleotides, lipids, and amino acids for the process of replication that is necessary for oncolysis.

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Antibodies targeting CD38, a NAD-degrading enzyme, have emerged as a promising immunotherapy against multiple myeloma (MM). Currently, the mechanisms by which anti-CD38 antibodies establish their therapeutic effects are poorly understood. Here, we advocate for the depletion of NAD to enhance the efficacy of anti-CD38-based immunotherapies in MM.

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The efficacy of oncolytic viruses (OVs), such as reovirus, is dictated by host immune responses, including those mediated by the pro- versus anti-inflammatory macrophages. As such, a detailed understanding of the interaction between reovirus and different macrophage types is critical for therapeutic efficacy. To explore reovirus-macrophage interactions, we performed tandem mass tag (TMT)-based quantitative temporal proteomics on mouse bone marrow-derived macrophages (BMMs) generated with two cytokines, macrophage colony stimulating factor (M-CSF) and granulocytic-macrophage colony stimulating factor (GM-CSF), representing anti- and proinflammatory macrophages, respectively.

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  • * The study revealed that cancer cells' response to reovirus infection is linked to changes in their metabolism, particularly involving pyruvate and oxidative stress, which influences their overall susceptibility to the virus.
  • * Therapeutically, enhancing the activity of an enzyme called pyruvate dehydrogenase (PDH) in cancer cells can make them more vulnerable to reovirus treatment, suggesting that modifying cancer cell metabolism could be an effective strategy to improve oncolytic virus therapies.
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Purpose: Stem-like cancer cells, with characteristic self-renewal abilities, remain highly refractory to various clinical interventions. As such, stemness-inhibiting entities, such as tumor suppressor p53, are therapeutically pursued for their anticancer activities. Interestingly, similar implications for tumor suppressor TAp73 in regulating stemness features within stem-like cancer cells remain unknown.

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NAD is a key metabolic redox cofactor that is regenerated from nicotinamide through the NAD salvage pathway. Here, we find that inhibiting the NAD salvage pathway depletes serine biosynthesis from glucose by impeding the NAD-dependent protein, 3-phosphoglycerate dehydrogenase (PHGDH). Importantly, we find that PHGDH breast cancer cell lines are exquisitely sensitive to inhibition of the NAD salvage pathway.

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  • Reticulon-4 (RTN4), known as Nogo, is linked to cancer progression, with lower levels correlating to better survival rates in patients with various cancers like lung and breast cancer.
  • Research using mass spectrometry revealed that knocking down RTN4 affects key processes like lipid homeostasis and AKT signaling, which are important for cancer cell survival and growth.
  • RTN4 deficiency not only inhibited cancer cell proliferation in lab tests and animal models but also enhanced the effectiveness of chemotherapy, suggesting it could be a potential target for cancer treatment.
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A lack of effective treatment is one of the main factors contributing to gastric cancer-related death. Discovering effective targets and understanding their underlying anti-cancer mechanism are key to achieving the best response to treatment and to limiting side effects. Although recent studies have shown that the cation channel transient receptor potential melastatin-2 (TRPM2) is crucial for cancer cell survival, the exact mechanism remains unclear, limiting its therapeutic potential.

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Significance: NAD is an essential redox cofactor in cellular metabolism and has emerged as an important regulator of a wide spectrum of disease conditions, most notably, cancers. As such, various strategies targeting NAD synthesis in cancers are in clinical trials. Recent Advances: Being a substrate required for the activity of various enzyme families, especially sirtuins and poly(adenosine diphosphate [ADP]-ribose) polymerases, NAD-mediated signaling plays an important role in gene expression, calcium release, cell cycle progression, DNA repair, and cell proliferation.

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Proteoglycans are promising therapeutic targets in Multiple Sclerosis (MS), because they regulate many aspects of the immune response. This was studied using surfen, an agent that binds both heparan sulphate proteoglycans (HSPGs) and chondroitin sulphate proteoglycans (CSPGs). Initial cell culture work on bone marrow derived macrophages (BMDMs) found that surfen reduced concentrations of the chemokines CCL2, CCL4 and CCL5, with reduced messenger (m)RNA expression for Tumor Necrosis Factor, IL-6, IL-1β and inducible nitric oxide synthase.

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  • Myeloid cells are crucial for fighting viral infections, but their differentiation during acute infections is not well understood.
  • The study introduced a new method called quantitative temporal in vivo proteomics (QTiPs) to analyze the changes in these cells during viral infections, focusing on their interactions with the host.
  • Findings revealed that inflammatory CD11b, Ly6G, and Ly6C cells transition into M2-like macrophages later in the infection, enhancing their ability to present antigens and respond metabolically.
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  • Cholesterol is crucial for the structure and function of animal cell membranes, but its levels differ significantly between various parts of the cell, with mitochondria having the lowest levels.
  • Mitochondria require cholesterol for several functions, including maintaining their membranes and producing substances like steroids, and changes in mitochondrial cholesterol are linked to diseases such as cancer and Alzheimer's.
  • Researchers have improved a method to measure cholesterol movement into the inner mitochondrial membrane by converting it to pregnenolone, allowing for sensitive detection and analysis of cholesterol import in cell studies.
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Pluripotency is an important feature of cancer stem cells (CSCs) that contributes to self-renewal and chemoresistance. The maintenance of pluripotency of CSCs under various pathophysiological conditions requires a complex interaction between various cellular pathways including those involved in homeostasis and energy metabolism. However, the exact mechanisms that maintain the CSC pluripotency remain poorly understood.

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Nicotinamide adenine dinucleotide (NAD) is an essential coenzyme for various physiological processes including energy metabolism, DNA repair, cell growth, and cell death. Many of these pathways are typically dysregulated in cancer cells, making NAD an intriguing target for cancer therapeutics. NAD is mainly synthesized by the NAD salvage pathway in cancer cells, and not surprisingly, the pharmacological targeting of the NAD salvage pathway causes cancer cell cytotoxicity in vitro and in vivo.

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  • Niemann-Pick type C (NPC) is a neurodegenerative disorder mainly caused by mutations in the NPC1 gene, leading to cholesterol accumulation and neuronal dysfunction.
  • Research on NPC1-deficient mice has shown imbalances in amino acid metabolism, with increased levels of branched-chain amino acids and changes in key metabolic enzymes in early stages of the disease.
  • Additionally, significant alterations in DNA methylation patterns and gene expression were observed, suggesting new mechanisms of NPC pathogenesis through disrupted amino acid metabolism and epigenetic changes in the cerebellum.
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Mitochondria require cholesterol for biogenesis and membrane maintenance, and for the synthesis of steroids, oxysterols and hepatic bile acids. Multiple pathways mediate the transport of cholesterol from different subcellular pools to mitochondria. In steroidogenic cells, the steroidogenic acute regulatory protein (StAR) interacts with a mitochondrial protein complex to mediate cholesterol delivery to the inner mitochondrial membrane for conversion to pregnenolone.

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Niemann-Pick type C1 (NPC1) is a late endosomal transmembrane protein, which, together with NPC2 in the endosome lumen, mediates the transport of endosomal cholesterol to the plasma membrane and endoplasmic reticulum. Loss of function of NPC1 or NPC2 leads to cholesterol accumulation in late endosomes and causes neuronal dysfunction and neurodegeneration. Recent studies indicate that cholesterol also accumulates in mitochondria of NPC1-deficient cells and brain tissue and that NPC1 deficiency leads to alterations in mitochondrial function and energy metabolism.

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Niemann-Pick Type C (NPC) disease is an autosomal recessive neurodegenerative disorder caused in most cases by mutations in the NPC1 gene. NPC1-deficiency is characterized by late endosomal accumulation of cholesterol, impaired cholesterol homeostasis, and a broad range of other cellular abnormalities. Although neuronal abnormalities and glial activation are observed in nearly all areas of the brain, the most severe consequence of NPC1-deficiency is a near complete loss of Purkinje neurons in the cerebellum.

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Mitochondrial cholesterol is maintained within a narrow range to regulate steroid and oxysterol synthesis and to ensure mitochondrial function. Mitochondria acquire cholesterol through several pathways from different cellular pools. Here we have characterized mitochondrial import of endosomal cholesterol using Chinese hamster ovary cells expressing a CYP11A1 fusion protein that converts cholesterol to pregnenolone at the mitochondrial inner membrane.

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Niemann-Pick Type C (NPC) disease is a fatal, neurodegenerative disorder, caused in most cases by mutations in the late endosomal protein NPC1. A hallmark of NPC disease is endosomal cholesterol accumulation and an impaired cholesterol homeostatic response, which might affect cholesterol transport to mitochondria and, thus, mitochondrial and cellular function. This study aimed to characterize mitochondrial cholesterol homeostasis in NPC disease.

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