Publications by authors named "Bargavi Thyagarajan"

We present an enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits. Best-in-class vectors were curated for accessing major striatal neuron populations including medium spiny neurons (MSNs), direct and indirect pathway MSNs, as well as Sst-Chodl, Pvalb-Pthlh, and cholinergic interneurons. Specificity was evaluated by multiple modes of molecular validation, three different routes of virus delivery, and with diverse transgene cargos.

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  • Researchers addressed the limited access to lower motor neurons (LMNs) in the mammalian spinal cord by creating single cell multiome datasets from mouse and macaque spinal cords to identify enhancers for different neuronal populations.* -
  • They cloned identified enhancers into viral vectors and conducted functional tests in mice to screen for effective candidates, which were then validated in rats and macaques.* -
  • This new toolkit for labeling LMNs and upper motor neurons (UMNs) can facilitate future research on cell function across species and contribute to potential therapies for neurodegenerative diseases in humans.*
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  • The mammalian cortex consists of different cell types that have specific properties, which are important for understanding how the cortex functions in both health and disease.
  • Researchers utilized data from mouse and human studies to identify marker genes and enhancers for various cortical cell types, creating a comprehensive set of tools for targeting these cells specifically.
  • They introduced fifteen new transgenic driver lines, two new reporter lines, and over 800 enhancer AAVs, facilitating a wide range of experimental approaches to study the mammalian cortex and its functions.
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  • Recent studies on human cortex have shown that GABAergic neurons have a complex hierarchical organization with various subclasses and specific types.
  • Researchers used advanced techniques to study these neurons in human brain slices, combining viral labeling and single-cell RNA sequencing.
  • The findings revealed detailed differences within GABAergic neuron types, including variations between human and mouse neurons and highlighted the need for comprehensive analysis to better understand brain cell properties.
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Proper brain function requires the assembly and function of diverse populations of neurons and glia. Single cell gene expression studies have mostly focused on characterization of neuronal cell diversity; however, recent studies have revealed substantial diversity of glial cells, particularly astrocytes. To better understand glial cell types and their roles in neurobiology, we built a new suite of adeno-associated viral (AAV)-based genetic tools to enable genetic access to astrocytes and oligodendrocytes.

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  • The HIV Research for Prevention (HIVR4P) conference focuses on sharing knowledge about various HIV prevention methods, including vaccines, antibody treatments, pre-exposure prophylaxis, and microbicides, from scientific details to social factors.
  • The virtual conference took place over two weekends in January and February 2021, attracting 1,802 participants from 92 countries amidst the COVID-19 pandemic.
  • The event featured 113 oral presentations and 266 poster presentations, summarizing key research and findings in HIV prevention, with additional resources available on the conference website.
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It is now well-accepted that Fc-mediated effector functions, including antibody-dependent cellular cytotoxicity (ADCC), can contribute to vaccine-elicited protection as well as post-infection control of HIV viremia. This picture was derived using a wide array of ADCC assays, no two of which are strictly comparable, and none of which is qualified at the clinical laboratory level. An earlier comparative study of assay protocols showed that while data from different ADCC assay formats were often correlated, they remained distinct in terms of target cells and the epitopes and antigen(s) available for recognition by antibodies, the effector cells, and the readout of cytotoxicity.

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The HIV Research for Prevention (HIVR4P) conference is dedicated to advancing HIV prevention research, responding to a growing consensus that effective and durable prevention will require a combination of approaches as well as unprecedented collaboration among scientists, practitioners, and community workers from different fields and geographic areas. The conference theme in 2018, "From Research to Impact," acknowledged an increasing focus on translation of promising research findings into practical, accessible, and affordable HIV prevention options for those who need them worldwide. HIVR4P 2018 was held in Madrid, Spain, on 21-25 October, with >1,400 participants from 52 countries around the globe, representing all aspects of HIV prevention research and implementation.

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  • - HIVR4P (HIV Research for Prevention) emphasizes the need for a combination of approaches to effectively combat the global HIV/AIDS epidemic, focusing on various biomedical strategies including vaccines and microbicides.
  • - The 2016 conference, held in Chicago, featured over 700 scientific presentations and aimed to foster collaboration among diverse stakeholders in the HIV prevention field with the theme "Partnering for Prevention."
  • - With participants from 42 countries, the conference highlighted a commitment to supporting early career researchers, ensuring sustainable progress in HIV prevention research for the future.
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Influenza is notable for its evolutionary capacity to escape immunity targeting the viral hemagglutinin. We used deep mutational scanning to examine the extent to which a high inherent mutational tolerance contributes to this antigenic evolvability. We created mutant viruses that incorporate most of the ≈10(4) amino-acid mutations to hemagglutinin from A/WSN/1933 (H1N1) influenza.

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Aging is a complex phenotype responsive to a plethora of environmental inputs; yet only a limited number of transcriptional regulators are known to influence life span. How the downstream expression programs mediated by these factors (or others) are coordinated into common or distinct set of aging effectors is an addressable question in model organisms, such as C. elegans.

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