Publications by authors named "Barbhuiya M"

Objective: We validated an automated microfluidic interleukin-6 (IL-6) immunoassay on the Ella platform for clinical use.

Methods: The assay was validated for precision, lower limit of quantification, analytical measurement range, accuracy, specificity, interference of biotin, tocilizumab, GP130, IL-6R, hemolysis, icterus, and lipemia, and establishing the reference value. The clinical performance was evaluated in 96 COVID-19 patients.

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A common approach to assess the nature of energy conversion in a classical fluid or plasma is to compare power densities of the various possible energy conversion mechanisms. A leading research area is quantifying energy conversion for systems that are not in local thermodynamic equilibrium (LTE), as is common in a number of fluid and plasma systems. Here we introduce the "higher-order nonequilibrium term" (HORNET) effective power density, which quantifies the rate of change of departure of a phase space density from LTE.

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Anisotropic electron heating during electron-only magnetic reconnection with a large guide magnetic field is directly measured in a laboratory plasma through in situ measurements of electron velocity distribution functions. Electron heating preferentially parallel to the magnetic field is localized to one separatrix, and anisotropies of 1.5 are measured.

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Objectives: To evaluate whether the routine coagulation tests can be performed using platelet depleted plasma (PDP, residual platelet count <40000/μL) to achieve maximum efficiency of the automated workflow and compare results of these tests performed with platelet poor plasma (PPP residual platelet count <10,000/μL) prepared manually 'offline'.

Design And Methods: The PDP was obtained first following 'on line' centrifugation at 4150 RPM (3000) for 7 min. The routine coagulation tests, Prothrombin Time (PT), Activated Partial Thromboplastin Clotting Time (aPTT), D-dimer (DD), Antithrombin III (AT3) and Fibrinogen (FBG) were performed.

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Objective: The SARS-CoV-2 pandemic has reached to a state where populations across the world should ad-just to live with it like many other diseases. Regular serosurveys are essential for disease surveil-lance and policy decisions. In this study, we evaluated the analytical and clinical performance of two commercially available rapid antibody assays.

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Tourism has always been a vulnerable industry. Minimal disturbances can halt or even destroy tourism and its associated economy. There is no dearth of research on vulnerability and resilience of the tourism industry for various tourism destinations,, and on post-disaster studies, but mainly these were limited to a city or tourist destination and focused on the destination image recovery.

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Weakly collisional and collisionless plasmas are typically far from local thermodynamic equilibrium (LTE), and understanding energy conversion in such systems is a forefront research problem. The standard approach is to investigate changes in internal (thermal) energy and density, but this omits energy conversion that changes any higher-order moments of the phase space density. In this Letter, we calculate from first principles the energy conversion associated with all higher moments of the phase space density for systems not in LTE.

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Objective: To evaluate the analytical and clinical performance of the 5 GEN cTnT assay by comparing it with the 4 GEN assay.

Methods: Imprecision, analytical measurement range (AMR), reference interval, and quantitative comparison were studied. Qualitative comparisons of the two assays for randomly selected patients with the cTnT test orders and patients with elevated N-terminal proB-type natriuretic peptide (NT-proBNP), decreased estimated glomerular filtration rate (eGFR), and increased procalcitonin were performed.

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Non-Maxwellian electron velocity distribution functions composed of a warm bulk population and a cold beam are directly measured during electron-only reconnection with a strong out-of-plane (guide) magnetic field in a laboratory plasma. Electron heating is localized to the separatrix, and the electron temperature increases continuously along the separatrix. The measured gain in enthalpy flux is 70% of the incoming Poynting flux.

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Objectives: The purpose of this study was to evaluate the accuracy and reliability of Mobile Application-Based Software for chair side cephalometric analysis.

Materials And Method: Pretreatment lateral cephalograms of 20 patients (10 males and 10 females) were selected randomly and were traced manually and also using Application-based software (One Ceph). 20 angular and three linear parameters were measured both manually and with the software in all the patients.

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Gallbladder cancer (GBC) is an aggressive gastrointestinal malignancy with no approved targeted therapy. Here, we analyze exomes (n = 160), transcriptomes (n = 115), and low pass whole genomes (n = 146) from 167 gallbladder cancers (GBCs) from patients in Korea, India and Chile. In addition, we also sequence samples from 39 GBC high-risk patients and detect evidence of early cancer-related genomic lesions.

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Background & Objectives: Gall bladder cancer (GBC) is a fatal neoplasm, with a globally variable incidence rates. To improve the survival rate of patients, a newer set of biomarkers needs to be discovered for its early detection and better prognosis. Our earlier studies on GBC proteomics and whole-genome methylome data revealed expression of desmin to be significantly downregulated with correlated promoter hypermethylation during gall bladder carcinogenesis.

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Article Synopsis
  • The Roche Cobas analyzer's hemolysis index (HI) check function is validated for measuring plasma cell-free hemoglobin (Hb) concentrations.
  • The method involved analyzing plasma samples, calculating Hb concentrations, and assessing accuracy against an established method, while also examining potential interferences.
  • Results showed high precision and a strong correlation with the reference assay, with no significant interference from bilirubin or lipemia, indicating that this method is efficient and cost-effective for Hb measurement.
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Metastasis is a major cause of cancer mortality. We generated an autochthonous transgenic mouse model whereby conditional expression of and enables hepatocellular carcinoma (HCC) to metastasize in >90% of mice. and cooperate and their sustained expression is required to elicit a transcriptional program associated with the activation of innate immunity, through secretion of a cytokinome that elicits recruitment and polarization of tumor associated macrophages (TAMs).

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Gallbladder cancer (GBC) is a rare malignancy, associated with poor disease prognosis with a 5-year survival of only 20%. This has been attributed to late presentation of the disease, lack of early diagnostic markers and limited efficacy of therapeutic interventions. Elucidation of molecular events in GBC can contribute to better management of the disease by aiding in the identification of therapeutic targets.

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Codon usage bias (CUB) refers to a phenomenon in which some synonymous codons are used in mature mRNA at a higher frequency than other members codifying the same amino acid. CUB is mainly determined by mutation pressure and natural selection. We used bioinformatic tools to analyze the protein coding sequences of mitochondrial CYB gene in different classes of Echinodermata to understand the patterns of codon usage.

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Article Synopsis
  • Mutant KRAS enhances the glycolytic process in lung cancer, particularly affecting protein glycosylation through the hexosamine biosynthetic pathway (HBP).
  • In a mouse model, it was shown that HBP activity promotes lung tumor growth by upregulating enzymes associated with epithelial-mesenchymal transition (EMT), a process linked to cancer progression.
  • Elevated O-linked β-N-acetylglucosamine (O-GlcNAcylation) modifies proteins and has been found to suppress cellular senescence and further drive lung tumorigenesis, showing a direct correlation with the cancerous processes influenced by KRAS.
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The vast majority of esophageal cancers in China, India and Iran are esophageal squamous cell carcinomas (ESCC). A timely diagnosis provides surgical removal as the main therapeutic option for patients with ESCC. Currently, there are no targeted therapies available for ESCC.

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Hepatocellular carcinoma (HCC) is a major cause of cancer-related death worldwide. Due to inadequate screening methods and the common coexistence of limited functional liver reserves, curative treatment options are limited. Liver transplantation is the only curative treatment modality for early HCC.

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Article Synopsis
  • The study examines codon usage and evolutionary relationships of mitochondrial protein coding genes across six continents to gain insights into genetic patterns in humans.
  • It reveals low codon usage bias, with specific correlations between codon usage and GC content (GC3), indicating different influences of natural selection and mutation pressures on various genes.
  • Phylogenetic analysis shows that the 13 human mitochondrial genes display distinct evolutionary relationships influenced by geographical distance among populations on different continents.
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Translation initiation generally occurs at AUG codons in eukaryotes, although it has been shown that non-AUG or noncanonical translation initiation can also occur. However, the evidence for noncanonical translation initiation sites (TISs) is largely indirect and based on ribosome profiling (Ribo-seq) studies. Here, using a strategy specifically designed to enrich N termini of proteins, we demonstrate that many human proteins are translated at noncanonical TISs.

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Article Synopsis
  • Gallbladder cancer (GBC) is a deadly cancer with poor treatment outcomes, highlighting the need for new therapies.
  • Researchers tested 130 small molecule inhibitors on GBC cell lines and found that the HSP90 inhibitor 17-AAG was particularly effective.
  • In both lab studies and mouse models, 17-AAG showed a significant reduction in tumor size and interfered with key cancer-promoting proteins, suggesting it could be a promising treatment strategy for GBC.
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Breast cancer is the most prevalent cancer in women worldwide. About 15-20% of all breast cancers do not express estrogen receptor, progesterone receptor or HER2 receptor and hence are collectively classified as triple negative breast cancer (TNBC). These tumors are often relatively aggressive when compared to other types of breast cancer, and this issue is compounded by the lack of effective targeted therapy.

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