Publications by authors named "Barbat A"

Article Synopsis
  • Dairy cattle breeds face recurrent recessive genetic defects that are often undetected due to conventional observation techniques missing various conditions, particularly those without clear symptoms.
  • A new data mining framework has been developed to identify these hidden recessive defects in livestock by analyzing genomic data and comparing homozygote numbers in cattle with diverse life histories.
  • This research uncovered 33 new genetic loci linked to increased juvenile mortality, offering insights into the genetic causes of inbreeding depression, which can enhance animal welfare and reduce industry losses.
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  • The study examined how heat stress during the gestation of dairy cows affects the performance of their daughters during the first lactation, focusing on French Holstein and Montbéliarde breeds.
  • Researchers analyzed 14 different traits, including milk production, fertility, and health characteristics, and categorized the Temperature-Humidity Index (THI) experienced during each month of pregnancy into seven classes.
  • Findings indicated that heat stress had minimal effects on most traits, with slightly negative impacts on milk production yields early in gestation and slightly positive effects later, suggesting that under current conditions in France, in utero heat stress may not significantly affect the daughters' future performance.
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  • - This study analyzes gestation length (GL) in 16 cattle breeds using extensive data from over 20 million gestations and one million calf genotypes, revealing breed average GLs ranging from 279.7 to 294.4 days with similar variability across breeds.
  • - It finds that direct heritability for GL is moderate to high (0.40-0.67), while maternal heritability is low (0.04-0.06), indicating that calf traits are more influential than maternal traits on GL.
  • - The research shows that shorter GLs can lead to higher calf mortality and are linked to dairy cows' milk production, highlighting the potential risks of selecting for reduced GL; further research is
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Article Synopsis
  • - The study analyzed gestation length (GL) across 16 cattle breeds using extensive databases, finding breed averages varying from 279.7 days in Holsteins to 294.4 days in Blonde d'Aquitaine, with standard deviations ranging between 5.2 to 5.8 days.
  • - It determined moderate to high direct heritability for calf traits related to GL (0.40 to 0.67), but low maternal heritability (0.04 to 0.06), indicating that calf traits influence GL more than the mother's traits.
  • - The research linked extreme breeding values for GL to higher mortality rates in newborn calves and milk production in mothers, revealing several quantitative trait loci (
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Background: Nine male and eight female calves born to a Normande artificial insemination bull named "Ly" were referred to the French National Observatory of Bovine Abnormalities for multiple fractures, shortened gestation, and stillbirth or perinatal mortality.

Results: Using Illumina BovineSNP50 array genotypes from affected calves and 84 half-sib controls, the associated locus was mapped to a 6.5-Mb interval on chromosome 19, assuming autosomal inheritance with germline mosaicism.

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  • This study examines the impact of increasing temperatures on dairy cattle fertility and production, focusing on Holstein and Montbeliarde breeds.
  • Genetic correlations showed that while fertility is generally stable across different temperature-humidity conditions, the best reproducers in Holsteins are more negatively impacted by heat stress than in Montbeliarde, highlighting breed differences.
  • Overall, rising temperatures are not expected to worsen the trade-off between production and fertility, but the top-producing animals today may face greater challenges due to heat stress in the future.
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In this paper, we developed a highly sensitive approach to detect interchromosomal rearrangements in cattle by searching for abnormal linkage disequilibrium patterns between markers located on different chromosomes in large paternal half-sib families genotyped as part of routine genomic evaluations. We screened 5571 families of artificial insemination sires from 15 breeds and revealed 13 putative interchromosomal rearrangements, 12 of which were validated by cytogenetic analysis and long-read sequencing. These consisted of one Robertsonian fusion, 10 reciprocal translocations, and the first case of insertional translocation reported in cattle.

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Although the US population is becoming increasingly diverse, diversity in medicine is lacking. Our aim was to examine trends in sex, racial, and ethnic diversity of trainees in the field of dermatology. Graduate medical education supplements published annually in the were used to obtain demographic data of dermatology trainees from 2014 to 2018.

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  • The study utilized a two-step GWAS approach to identify and validate quantitative trait loci (QTL) related to various traits in three cattle breeds: Montbéliarde, Normande, and Holstein.
  • A total of 84 QTL were detected across traits such as milk production and udder health, revealing shared genomic regions among breeds and highlighting candidate variants (CV) with significant effects.
  • The research confirmed the effectiveness of these CV, showing that they often had stronger associations with the traits than traditional SNPs, emphasizing their potential for improving cattle breeding.
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Although women make up a significant portion of the workforce in dermatology, they remain underrepresented in academia. This study investigates the number of male and female symposium speakers at the American Academy of Dermatology annual meetings over a three-year period and compares research productivity and academic rank between the men and women invited to speak. The results demonstrate a steady increase in the representation of female symposium speakers at the conference from 2016 to 2018, although a higher proportion of invited male speakers hold professorships and leadership positions.

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Background: Ladders are a commonly used piece of equipment; however, their use is accompanied by a significant potential for injury. Fractures of the head, face, and neck are potential consequences of ladder use and can be devastating due to potential for severe sequalae.

Objectives: To describe the frequency and pattern of ladder-related head, face, and neck fractures from 2009-2018.

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Purpose: To estimate the incidence of patients presenting to emergency departments (EDs) as a result of facial trauma sustained from skateboarding.

Patients And Methods: The National Electronic Injury Surveillance System (NEISS) database was queried for skateboard-related head and face fractures, contusions, abrasions, and lacerations from 2009 through 2018. We identified 2,519 reported injuries, extrapolating to a national incidence of 100,201 injuries.

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Background: Although women make up a substantial portion of the workforce in emergency medicine, they remain under-represented in academia.

Methods: This study investigates trends in the representation of female speakers at the American College of Emergency Physicians scientific assembly-the largest academic emergency medicine conference in the world. Publication profiles, speaking duration and gender composition of speakers were collected and compared over a 3-year period.

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A genome scan for homozygous haplotype deficiency coupled with whole-genome sequence data analysis is a very effective method to identify embryonic lethal mutations in cattle. Among other factors, the power of the approach depends on the availability of a greater amount of genotyping and sequencing data. In the present study, we analyzed the largest known panel of Illumina BovineSNP50 (Illumina Inc.

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Whole-genome sequencing plays now a leading role in epidemiologic studies of tuberculosis. DNA extraction of Mycobacterium tuberculosis complex (MTBC) requires complete inactivation of the strains, to be handled for further molecular procedures. In this study we compared two chloroform-based denaturation methods (one with a step of heat killing, one without) to a traditional heat inactivation method.

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We scanned the genome of 77,815 Normande cattle with different Illumina SNP chips (Illumina Inc., San Diego, CA) to map recessive embryonic lethal mutations using homozygous haplotype deficiency. We detected 2 novel haplotypes on chromosomes 11 and 24 but did not confirm 6 previously reported haplotypes.

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Background: Phytochemicals are natural compounds synthesized as secondary metabolites in plants and represent an important source of molecules with therapeutic applications. Attention is accorded to their potential in anti-cancer therapies as single agents or adjuvant treatment. Herby, we evaluated the in vitro effects of a panel of natural compounds with focus on caffeic acid phenethyl ester (CAPE) and Kaempferol for the treatment of human colon cancer.

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Article Synopsis
  • Researchers conducted an association study on 32,491 French Holstein dairy cows to analyze the genetic factors affecting milking speed using SNP chip data.
  • They found significant SNPs on 22 chromosomes related to milking speed, with 971 genome-wide significant SNPs identified, some also linked to clinical mastitis and somatic cell score.
  • Notable findings included the discovery of 11 novel quantitative trait loci (QTL) for milking speed, with the strongest signal associated with the ZFAT gene on chromosome 14.
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Researching depletions in homozygous genotypes for specific haplotypes among the large cohorts of animals genotyped for genomic selection is a very efficient strategy to map recessive lethal mutations. In this study, by analyzing real or imputed Illumina BovineSNP50 (Illumina Inc., San Diego, CA) genotypes from more than 250,000 Holstein animals, we identified a new locus called HH6 showing significant negative effects on conception rate and nonreturn rate at 56 d in at-risk versus control mating.

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Stature is affected by many polymorphisms of small effect in humans . In contrast, variation in dogs, even within breeds, has been suggested to be largely due to variants in a small number of genes. Here we use data from cattle to compare the genetic architecture of stature to those in humans and dogs.

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As a result of the 1000 Bull Genome Project, it has become possible to impute millions of variants, with many of these potentially causative for traits of interest, for thousands of animals that have been genotyped with medium-density chips. This enormous source of data opens up very interesting possibilities for the inclusion of these variants in genomic evaluations. However, for computational reasons, it is not possible to include all variants in genomic evaluation procedures.

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A candidate mutation in the sex hormone binding globulin gene was proposed in 2013 to be responsible for the MH1 recessive embryonic lethal locus segregating in the Montbéliarde breed. In this follow-up study, we excluded this candidate variant because healthy homozygous carriers were observed in large-scale genotyping data generated in the framework of the genomic selection program. We fine mapped the MH1 locus in a 702-kb interval and analyzed genome sequence data from the 1,000 bull genomes project and 54 Montbéliarde bulls (including 14 carriers and 40 noncarriers).

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Breed differences and nonadditive genetic effects for milk production traits, somatic cell score (SCS), conception rate (CR), and days to first service (DFS) were estimated for Holstein × Montbéliarde and Holstein × Normande crossbreds, using an animal model adapted from the French genetic evaluation and extended to across-breed analysis. Inbreeding and breed differences were estimated from all purebred recorded cows. Only records from 1,137 herds with Holstein × Montbéliarde crossbred cows and from 1,033 herds with Holstein × Normande crossbred cows were used to estimate crossbreeding parameters.

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