Publications by authors named "Balaji V S Iyer"

Multi-functional nanoparticle thin films are being used in various applications ranging from biosensing to photo-voltaics. In this study, we integrate two different numerical approaches to understand the interplay between the mechanical deformation and optical response of polymer grafted plasmonic nanoparticle (PGPN) arrays. Using numerical simulations we examine the deformation of thin films formed by end-functionalised polymer grafted nanoparticles subject to uniaxial elongation.

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computer simulations we examine the mechanical response of hybrid polymer-particle networks composed of rigid spherical nanoparticles with long flexible polymer chains grafted onto their surface. The canopy of grafted polymer arms are end-functionalised such that interacting polymer-grafted nanoparticles (PGNs) form labile bonds when their coronas overlap. In the present study, the number of grafted arms, , are such that the PGN brushes are in the small ( = 600) and intermediate curvature ( = 900 and 1200) regime with stable bonded interactions.

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End-functionalised polymer grafted nanoparticles (PGNs) form bonds when their coronas overlap. The bonded interactions between the overlapping PGNs depend on the energy of the bonds (). In the present study, oscillatory deformation imposed on a simple system with interacting PGNs placed on the vertices of a triangle is employed to examine the local dynamics as a function of energy of the bonds and the frequency of oscillation relative to the characteristic rupture frequency, = 2π exp(-/), of the bonds.

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Via a new dynamic, three-dimensional computer model, we simulate the tensile deformation of polymer-grafted nanoparticles that are cross-linked by labile bonds, which can readily rupture and reform. For a range of relatively high strains, the network does not fail, but rather restructures into a stable, ordered structure. Within this network, the reshuffling of the labile bonds enables the formation of this new morphology.

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Using a multi-scale computational approach, we determine the effect of introducing a small fraction of high-strength connections between cross-linked nanoparticles. The nanoparticles' rigid cores are decorated with a corona of grafted polymers, which contain reactive functional groups at the chain ends. With the overlap of neighboring coronas, these reactive groups can form weak labile bonds, which can reform after breakage, or stronger bonds, which rupture irreversibly and thus, the nanoparticles are interconnected by dual cross-links.

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Lattice animal model of chromosome organization.

Phys Rev E Stat Nonlin Soft Matter Phys

July 2012

Polymer models tied together by constraints of looping and confinement have been used to explain many of the observed organizational characteristics of interphase chromosomes. Here we introduce a simple lattice animal representation of interphase chromosomes that combines the features of looping and confinement constraints into a single framework. We show through Monte Carlo simulations that this model qualitatively captures both the leveling off in the spatial distance between genomic markers observed in fluorescent in situ hybridization experiments and the inverse decay in the looping probability as a function of genomic separation observed in chromosome conformation capture experiments.

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We formulate a coarse-grained mean-field approach to study the dynamics of the flexible ring polymer in any given obstacle (gel or melt) environment. The similarity of the static structure of the ring polymer with that of the ideal randomly branched polymer is exploited in formulating the dynamical model using aspects of the pom-pom model for branched polymers. The topological constraints are handled via the tube model framework.

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