Publications by authors named "Bahar Zirak"

2'3'-Cyclic guanosine monophosphate (GMP)-AMP (cGAMP) is a second messenger synthesized upon detection of cytosolic double-stranded DNA (dsDNA) and passed between cells to facilitate downstream immune signaling. Ectonucleotide pyrophosphatase phosphodiesterase I (ENPP1), an extracellular enzyme, was the only metazoan hydrolase known to regulate cGAMP levels to dampen anti-cancer immunity. Here, we uncover ENPP3 as the second and likely the only other metazoan cGAMP hydrolase under homeostatic conditions.

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Article Synopsis
  • Small non-coding RNAs are secreted via various mechanisms, but the sorting and secretion processes are not fully understood.
  • The study introduces ExoGRU, a machine learning model that predicts the probabilities of small RNA secretion based on their RNA sequences, validated through experimental methods.
  • The research identifies RNA-binding proteins that influence small RNA secretion and develops a technique called exoCLIP to study RNA-protein interactions, highlighting the potential of machine learning in biological research and its applications in therapeutics.
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Regulatory T cells (Tregs) reside in nonlymphoid tissues where they carry out unique functions. The molecular mechanisms responsible for Treg accumulation and maintenance in these tissues are relatively unknown. Using an unbiased discovery approach, we identified (layilin), a C-type lectin-like receptor, to be preferentially and highly expressed on a subset of activated Tregs in healthy and diseased human skin.

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Mature adipocytes store fatty acids and are a common component of tissue stroma. Adipocyte function in regulating bone marrow, skin, muscle, and mammary gland biology is emerging, but the role of adipocyte-derived lipids in tissue homeostasis and repair is poorly understood. Here, we identify an essential role for adipocyte lipolysis in regulating inflammation and repair after injury in skin.

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Systemic cytokine therapy is limited by toxicity due to activation of unwanted immune cells in off-target tissues. Injectable nanomaterials that interact with the immune system have potential to offer improved pharmacokinetics and cell specificity compared to systemic cytokine therapy by instead capturing and potentiating endogenous cytokine. Here we demonstrate the use of high aspect ratio polycaprolactone nanowires conjugated to cytokine-binding antibodies that assemble into porous matrices when injected into the subcutaneous space.

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Signaling through CD27 plays a role in T cell activation and memory. However, it is currently unknown how this costimulatory receptor influences CD4 effector T (Teff) cells in inflamed tissues. In the current study, we used a murine model of inducible self-antigen expression in the epidermis to elucidate the functional role of CD27 on autoreactive Teff cells.

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Restoration of barrier-tissue integrity after injury is dependent on the function of immune cells and stem cells (SCs) residing in the tissue. In response to skin injury, hair-follicle stem cells (HFSCs), normally poised for hair generation, are recruited to the site of injury and differentiate into cells that repair damaged epithelium. We used a SC fate-mapping approach to examine the contribution of regulatory T (Treg) cells to epidermal-barrier repair after injury.

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Regulatory T cells (T) are closely related to T17 cells and use aspects of the T17-differentiation program for optimal immune regulation. In several chronic inflammatory human diseases, T express IL-17A, suggesting that dysregulation of T17-associated pathways in T may result in either loss of suppressive function and/or conversion into pathogenic cells. The pathways that regulate the T17 program in T are poorly understood.

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Toll-like receptors TLR7 and TLR9 are both implicated in the activation of autoreactive B cells and other cell types associated with systemic lupus erythematosus (SLE) pathogenesis. However, Tlr9-/- autoimmune-prone strains paradoxically develop more severe disease. We have now leveraged the negative regulatory role of TLR9 to develop an inducible rapid-onset murine model of systemic autoimmunity that depends on T cell detection of a membrane-bound OVA fusion protein expressed by MHC class II+ cells, expression of TLR7, expression of the type I IFN receptor, and loss of expression of TLR9.

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Article Synopsis
  • Migratory dendritic cell (DC) subsets transport tissue antigens to draining lymph nodes, which can either trigger or downregulate T cell immune responses.
  • In a mouse model of skin-specific self-antigen expression, CD103 dermal DCs actively move from the skin to skin draining lymph nodes within 48 hours after antigen introduction, primarily activating local effector T cells during this window.
  • The study emphasizes that the signals from skin-resident T cells are essential for the migration of CD103 DCs and the development of a strong autoimmune reaction, while signals from T cells in the draining lymph nodes do not influence DC migration.
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The maintenance of tissue homeostasis is critically dependent on the function of tissue-resident immune cells and the differentiation capacity of tissue-resident stem cells (SCs). How immune cells influence the function of SCs is largely unknown. Regulatory T cells (Tregs) in skin preferentially localize to hair follicles (HFs), which house a major subset of skin SCs (HFSCs).

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