Calibration comparison between two passive samplers -o-DGT and POCIS- for 109 hydrophilic emerging and priority organic compounds.

The Polar Organic Chemical Integrative Samplers (POCIS) is the most widely used passive sampler for hydrophilic compounds, but unsuitable for certain ionic organic contaminants. The Diffusive Gradient in Thin-Film technique (o-DGT) has shown positive results for both ionic and hydrophilic compounds. However, a calibration step is now needed to evaluate kinetic constant of accumulation for a wide range of molecules.

Determination of diffusion coefficients in agarose and polyacrylamide gels for 112 organic chemicals for passive sampling by organic Diffusive Gradients in Thin films (o-DGT).

The diffusive gradient in thin film technique was recently adapted to organic compounds. The diffusional coefficient (D) is a key parameter needed to calculate the time-weighted average concentration. In this study, two methods are used for D measurement in two gels (agarose and polyacrylamide): the diffusion cell method (D) and the slice stacking method (D).

Comparison of two approaches for the classification of 16S rRNA gene sequences.

The use of 16S rRNA gene sequences for microbial identification in clinical microbiology is accepted widely, and requires databases and algorithms. We compared a new research database containing curated 16S rRNA gene sequences in combination with the lca (lowest common ancestor) algorithm (RDB-LCA) to a commercially available 16S rDNA Centroid approach. We used 1025 bacterial isolates characterized by biochemistry, matrix-assisted laser desorption/ionization time-of-flight MS and 16S rDNA sequencing.

Microarray-based sketches of the HERV transcriptome landscape.

Human endogenous retroviruses (HERVs) are spread throughout the genome and their long terminal repeats (LTRs) constitute a wide collection of putative regulatory sequences. Phylogenetic similarities and the profusion of integration sites, two inherent characteristics of transposable elements, make it difficult to study individual locus expression in a large-scale approach, and historically apart from some placental and testis-regulated elements, it was generally accepted that HERVs are silent due to epigenetic control. Herein, we have introduced a generic method aiming to optimally characterize individual loci associated with 25-mer probes by minimizing cross-hybridization risks.