Publications by authors named "Ayllon M"

Background: Several scores have been developed to stratify the risk of graft loss in controlled donation after circulatory death (cDCD). However, their performance is unsatisfactory in the Spanish population, where most cDCD livers are recovered using normothermic regional perfusion (NRP). Consequently, we explored the role of different machine learning-based classifiers as predictive models for graft survival.

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  • - The family discussed consists of viruses that have either a mono- or multi-segmented positive-sense RNA genome and primarily infect plants and filamentous fungi.
  • - This family includes several genera of plant viruses and fungal viruses.
  • - The information is sourced from the International Committee on Taxonomy of Viruses (ICTV) Report on the family, which can be accessed online.
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Background And Objective: Liver transplantation is the gold standard treatment for patients with hepatocellular carcinoma (HCC). Current allocation systems face a complex issue due to the imbalance between available organs and recipients. The prioritization of HCC patients remains controversial, leading to potential disparities in access to transplantation.

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species cause gray mold disease in more than 200 crops worldwide. To control this disease, chemical fungicides are usually applied. However, more sustainable control alternatives should be explored, such as the use of hypovirulent mycovirus-infected fungal strains.

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  • Mycoviruses are diverse viruses that can alter the characteristics of their fungal hosts, but there is a lack of detailed research on them.
  • The proposed model focuses on a specific fungus known for its ease of study, wide distribution, and existing research resources, making it a prime candidate for exploring mycovirus interactions.
  • By studying mycoviruses in this model, researchers aim to gain valuable insights that could benefit understanding of plant pathogens and enhance knowledge of virus-fungal interactions.
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Background: The COVID-19 pandemic has significantly disrupted tuberculosis (TB) programs, making it urgent to focus TB elimination efforts on key populations. People experiencing incarceration are at high risk for TB, however, how COVID-19-related disruptions have impacted incarcerated populations with TB is unknown.

Methods: Using Peruvian National TB Program data from Jan 2018 to Dec 2021, an interrupted time series of drug-susceptible (DS) TB case notifications pre- and during COVID-19 was conducted (cut-off date: COVID-19 emergency declaration in Peru, 16 March 2020).

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The application of machine learning (ML) algorithms in various fields of hepatology is an issue of interest. However, we must be cautious with the results. In this letter, based on a published ML prediction model for acute kidney injury after liver surgery, we discuss some limitations of ML models and how they may be addressed in the future.

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  • Fusariviridae is a family of RNA viruses with medium-sized genomes ranging from 5.9 to 10.7 kb and mainly consists of bicistronic genomic RNAs.
  • In bicistronic RNA, the first open reading frame (ORF) encodes a protein that has both RNA-directed RNA polymerase and RNA helicase functions, while the role of the second ORF is not well understood.
  • Notably, Fusarivirids do not form traditional virus particles (virions), and this information is detailed in the International Committee on Taxonomy of Viruses (ICTV) Report available at ictv.global/report/fusariviridae.
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  • The development of viral infectious full-length clones has greatly enhanced our understanding of key aspects of the viral life cycle, including genome replication and transmission.
  • This text outlines the specific protocols for creating an infectious clone of Botrytis virus F (BVF), which targets the plant pathogenic fungus Botrytis cinerea.
  • It also includes steps for determining the full sequence of the cloned virus, preparing fungal protoplasts, and transfecting these protoplasts with transcripts from the BVF clone.
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  • BcssDV1, a newly characterized tetrasegmented single-stranded DNA virus, infects the fungus Botrytis cinerea and is associated with low variability among variants found in Spain and Italy.
  • The virus consists of four genomic segments coding for essential proteins including a replication initiation protein and a capsid protein, with DNA-A and DNA-D being the most conserved segments.
  • This research provides a comprehensive molecular characterization and highlights the potential implications of BcssDV1 in understanding mycovirus-host interactions and its geographical distribution.
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  • Next-generation sequencing (NGS) of total RNA has enhanced our understanding of viruses affecting various hosts, including fungi, by revealing new viruses and their evolutionary patterns.
  • The text outlines specific procedures for isolating the plant pathogenic fungus Botrytis cinerea from grapevine plants with gray mold, as well as methods for culturing and maintaining this fungus.
  • It details the process of RNA extraction for NGS, a bioinformatics pipeline for identifying mycoviruses in the samples, and techniques for validating the detected mycoviruses.
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  • In April 2023, the International Committee on Taxonomy of Viruses (ICTV) approved changes to the phylum's classification during their annual vote.
  • The update included the addition of one new family, 14 new genera, and 140 new species.
  • Additionally, the taxonomy featured the renaming of two genera and 538 species, along with the removal of one species and the abolition of four others.
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The widespread uptake of different machine perfusion (MP) strategies for liver transplant has been driven by an effort to minimize graft injury. Damage to the cholangiocytes during the liver donation, preservation, or early posttransplant period may result in stricturing of the biliary tree and inadequate biliary drainage. This problem continues to trouble clinicians, and may have catastrophic consequences for the graft and patient.

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is a family of capsidless viruses with positive-sense RNA genomes of 7.3-18.3 kb that possess either a single large open reading frame (ORF) or two ORFs.

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Knowledge of mycovirus diversity, evolution, horizontal gene transfer and shared ancestry with viruses infecting distantly related hosts, such as plants and arthropods, has increased vastly during the last few years due to advances in the high throughput sequencing methodologies. This also has enabled the discovery of novel mycoviruses with previously unknown genome types, mainly new positive and negative single-stranded RNA mycoviruses ((+) ssRNA and (-) ssRNA) and single-stranded DNA mycoviruses (ssDNA), and has increased our knowledge of double-stranded RNA mycoviruses (dsRNA), which in the past were thought to be the most common viruses infecting fungi. Fungi and oomycetes (Stramenopila) share similar lifestyles and also have similar viromes.

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Circulating tumor cells (CTCs), and particularly circulating cancer stem cells (cCSC), are prognostic biomarkers for different malignancies and may be detected using liquid biopsies. The ex vivo culture of cCSCs would provide valuable information regarding biological aggressiveness and would allow monitoring the adaptive changes acquired by the tumor in real time. In this prospective pilot study, we analyzed the presence of EpCAM CTCs using the IsoFlux system in the peripheral blood of 37 patients with hepatocellular carcinoma undergoing transarterial chemoembolization (TACE).

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  • * It was expanded to include two new families, 41 new genera, and 98 new species, along with reclassifications for 349 species.
  • * The article details the updated taxonomy of Negarnaviricota, including corrections of misspelled names for seven species.
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Typical members of the family produce filamentous, enveloped virions containing a single molecule of linear, negative-sense RNA of about about 10 kb, but some may not produce any virions. The family includes several genera, some with multiple species. Mymonavirids usually infect filamentous fungi, but a few have been identified associated with insects, oomycetes or plants.

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Botrytis virus F (BVF) is a positive-sense, single-stranded RNA (+ssRNA) virus within the family of the plant-pathogenic fungus . In this study, the complete sequence of a BVF strain isolated from collected from grapevine fields in Spain was analyzed. This virus, in this work BVF-V448, has a genome of 6827 nt in length, excluding the poly(A) tail, with two open reading frames encoding an RNA dependent RNA polymerase (RdRP) and a coat protein (CP).

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High throughput sequencing allowed the discovery of many new viruses and viral organizations increasing our comprehension of virus origin and evolution. Most RNA viruses are currently characterized through similarity searches of annotated virus databases. This approach limits the possibility to detect completely new virus-encoded proteins with no detectable similarities to existing ones, i.

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Background: Few series have reported the utility of fast-track protocols (FTP) in minimally invasive liver surgery.

Aim: To report the applicability of FTP in minimally invasive liver surgery and to correlate with difficulty scores.

Methods: The series of patients undergoing minimally invasive liver surgery from 2014 was analyzed.

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The most economically important biotic stresses in crop production are caused by fungi, oomycetes, insects, viruses, and bacteria. Often chemical control is still the most commonly used method to manage them. However, the development of resistance in the different pathogens/pests, the putative damage on the natural ecosystem, the toxic residues in the field, and, thus, the contamination of the environment have stimulated the search for saferalternatives such as the use of biological control agents (BCAs).

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Background: Liver surgery has traditionally been characterized by the complexity of its procedures and potentially high rates of morbidity and mortality in inexperienced hands. The robotic approach has gradually been introduced in liver surgery and has increased notably in recent years. However, few centers currently perform robotic liver surgery and experiences in robot-assisted surgical procedures continue to be limited compared to the laparoscopic approach.

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