The role of Smarcad1 in retroviral repression in mouse embryonic stem cells.

Background: Moloney murine leukemia virus (MLV) replication is suppressed in mouse embryonic stem cells (ESCs) by the Trim28-SETDB1 complex. The chromatin remodeler Smarcad1 interacts with Trim28 and was suggested to allow the deposition of the histone variant H3.3.

Differential effect of histone H3.3 depletion on retroviral repression in embryonic stem cells.

Background: Integration of retroviruses into the host genome can impair the genomic and epigenomic integrity of the cell. As a defense mechanism, epigenetic modifications on the proviral DNA repress retroviral sequences in mouse embryonic stem cells (ESC). Here, we focus on the histone 3 variant H3.

Trim24 and Trim33 Play a Role in Epigenetic Silencing of Retroviruses in Embryonic Stem Cells.

Embryonic stem cells (ESC) have the ability to epigenetically silence endogenous and exogenous retroviral sequences. Trim28 plays an important role in establishing this silencing, but less is known about the role other Trim proteins play. The Tif1 family is a sub-group of the Trim family, which possess histone binding ability in addition to the distinctive RING domain.

Surface Regions of Interest for Viewpoint Selection.

While the detection of the interesting regions in images has been extensively studied, relatively few papers have addressed surfaces. This paper proposes an algorithm for detecting the regions of interest of surfaces. It looks for regions that are distinct both locally and globally and accounts for the distance to the foci of attention.

Context-aware saliency detection.

We propose a new type of saliency—context-aware saliency—which aims at detecting the image regions that represent the scene. This definition differs from previous definitions whose goal is to either identify fixation points or detect the dominant object. In accordance with our saliency definition, we present a detection algorithm which is based on four principles observed in the psychological literature.

Animation of flocks flying in line formations.

We provide a biologically motivated technique for modeling and animating bird flocks in flight, which produces plausible and realistic-looking flock animations. While most previous approaches have focused on animating cluster formations, this article introduces a technique for animating flocks that fly in certain patterns, so-called line formations. We distinguish between the behavior of such flocks during initiation and their behavior during steady flight.

Uncluttering graph layouts using anisotropic diffusion and mass transport.

Many graph layouts include very dense areas, making the layout difficult to understand. In this paper, we propose a technique for modifying an existing layout in order to reduce the clutter in dense areas. A physically inspired evolution process based on a modified heat equation is used to create an improved layout density image, making better use of available screen space.

Online dynamic graph drawing.

This paper presents an algorithm for drawing a sequence of graphs online. The algorithm strives to maintain the global structure of the graph and thus the user's mental map, while allowing arbitrary modifications between consecutive layouts. The algorithm works online and uses various execution culling methods in order to reduce the layout time and handle large dynamic graphs.

Multi-level graph layout on the GPU.

This paper presents a new algorithm for force directed graph layout on the GPU. The algorithm, whose goal is to compute layouts accurately and quickly, has two contributions. The first contribution is proposing a general multi-level scheme, which is based on spectral partitioning.