Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists.

Background: Single-cell RNA sequencing (scRNA-Seq) is an increasingly popular platform to study heterogeneity at the single-cell level. Computational methods to process scRNA-Seq data are not very accessible to bench scientists as they require a significant amount of bioinformatic skills.

Results: We have developed Granatum, a web-based scRNA-Seq analysis pipeline to make analysis more broadly accessible to researchers.