Publications by authors named "Arshed Al-Obeidi"

Behçet's disease (BD) is a multi-system inflammatory disorder with vasculitic features. It does not suit any of the current pathogenesis-driven disease classifications well, a unifying concept of its pathogenesis is not unanimously conceivable at present, and its etiology is obscure. Still, evidence from immunogenetic and other studies supports the notion of a complex-polygenic disease with robust innate effector responses, reconstitution of regulatory T cells upon successful treatment, and first clues to the role of an, as of yet, underexplored adaptive immune system and its antigen recognition receptors.

View Article and Find Full Text PDF

Objectives: The endoplasmic reticulum aminopeptidase () haplotype encodes for a variant allotype of the endoplasmic reticulum (ER)-resident peptide-trimming aminopeptidase ERAP1 with low enzymatic activity. This haplotype recessively confers the highest risk for Behçet's diseases (BD) currently known, but only in carriers of , the classical risk factor for the disease. The mechanistic implications and biological consequences of this epistatic relationship are unknown.

View Article and Find Full Text PDF
Article Synopsis
  • Genetic modification using CRISPR-Cas9 in human leukemic cell lines is widely used for studying gene function, but this approach assumes minimal genetic drift and experimental variability among derived clones.
  • A study of clonal human leukemia T-cell lines revealed significant variability in sensitivity to chemotherapy, indicating that editing methods and genetic instability can influence cell death responses.
  • Whole genome sequencing of clonal lines showed both unique and shared genetic variants; the results emphasize the need to consider genetic variation when designing experiments to analyze gene function post-cloning.
View Article and Find Full Text PDF

Introduction: The information content of multiparametric flow cytometry experiments is routinely underexploited given the paucity of adequate tools for unbiased comprehensive data analysis that can be applied successfully and independently by immunologists without computational training.

Methods: We aimed to develop a tool that allows straightforward access to the entire information content of any given flow cytometry panel for immunologists without special computational expertise. We used a data analysis approach which accounts for all mathematically possible combinations of markers in a given panel, coded the algorithm and applied the method to mined and self-generated data sets.

View Article and Find Full Text PDF

Neutrophil extracellular trap (NET) formation can generate short-term, functional anucleate cytoplasts and trigger loss of cell viability. We demonstrated that the necroptotic cell death effector mixed lineage kinase domain-like (MLKL) translocated from the cytoplasm to the plasma membrane and stimulated downstream NADPH oxidase-independent ROS production, loss of cytoplasmic granules, breakdown of the nuclear membrane, chromatin decondensation, histone hypercitrullination, and extrusion of bacteriostatic NETs. This process was coordinated by receptor-interacting protein kinase-1 (RIPK1), which activated the caspase-8-dependent apoptotic or RIPK3/MLKL-dependent necroptotic death of mouse and human neutrophils.

View Article and Find Full Text PDF