Design and synthesis of highly constrained factor Xa inhibitors: amidine-substituted bis(benzoyl)--diazepan-2-ones and bis(benzylidene)-bis(gem-dimethyl)cycloketones.

Two conformationally constrained templates have been designed to provide selective inhibitors of the coagulation cascade serine protease, Factor Xa (FXa). The most active inhibitor, 2,7-bis[(Z)-p-amidinobenzylidene)]-3,3,6,6-tetramethylcycloheptanone, exhibits a K(i) of 42 nM against FXa, with strong selectivity against thrombin (1000-fold), trypsin (300-fold) and plasmin (900-fold). With only two freely rotatable bonds, molecular modeling suggests that one amidine group is positioned into the S1 pocket, forming hydrogen bonds with the side chain of Asp189, similar to other amidine-based inhibitors, with the second benzamidine positioned into the S4 pocket in a position to form strong cation-pi bonding with the S4 aryl cage.

Synthesis, structures, and conformational characteristics of calixarene monoanions and dianions.

The synthesis, complete characterization, and solid state structural and solution conformation determination of calix[n]arenes (n = 4, 6, 8) is reported. A complete series of X-ray structures of the alkali metal salts of calix[4]arene (HC4) illustrate the great influence of the alkali metal ion on the solid state structure of calixanions (e.g.

Copper(I) and copper(II) complexes possessing cross-linked imidazole-phenol ligands: structures and dioxygen reactivity.

Catalytic reduction of O2 to H2O, and coupling to membrane proton translocation, occurs at the heterobinuclear heme a3-CuB active site of cytochrome c oxidase. One of the CuB ligated histidines is cross-linked to a neighboring tyrosine (C-N bond; tyrosine C6 and histidine epsilon-nitrogen), and the protic residue of this cross-linked His-Tyr moiety is proposed to participate as both an electron and a proton donor in the catalytic dioxygen reduction event. To provide insight into the chemistry of such a moiety, we have synthesized and characterized tetra- and tridentate pyridylalkylamine chelate ligands {LN4OR and LN3OR (R = H or Me)}, which include an imidazole-phenol (or anisole) cross-link and their copper(I/II) complexes.

A stable alkyl hydride of a first row transition metal.

Hydrogenolysis of a Cr(III) dialkyl precursor produced a binuclear chromium complex with a bridging hydride and a bridging alkyl; this structurally characterized organometallic compound is thermally very stable and does not undergo the expected reductive elimination of alkane.

Substituent control of hydrogen bonding in palladium(II)-pyrazole complexes.

Inter- and intramolecular hydrogen bonding of an N-H group in pyrazole complexes was studied using ligands with two different groups at pyrazole C-3 and C-5. At C-5, groups such as methyl, i-propyl, phenyl, or tert-butyl were present. At C-3, side chains L-CH(2)- and L-CH(2)CH(2)- (L = thioether or phosphine) ensured formation of chelates to a cis-dichloropalladium(II) fragment through side-chain atom L and the pyrazole nitrogen closest to the side chain.

Rh(II) and Rh(I) two-legged piano-stool complexes: structure, reactivity, and electronic properties.

The ligand 1,4-bis[4-(diphenylphosphino)butyl]-2,3,5,6-tetramethylbenzene, 3, was used to synthesize a mononuclear Rh(II) complex [(eta(1):eta(6):eta(1)-1,4-bis[4-(diphenylphosphino)butyl]-2,3,5,6-tetramethylbenzene)Rh][PF(6)](2), 6+, in a two-legged piano-stool geometry. The structural and electronic properties of this novel complex including a single-crystal EPR analysis are reported. The complex can be cleanly interconverted with its Rh(I) form, allowing for a comparison of the structural properties and reactivity of both oxidation states.

Intramolecular C-H activation by inferred terminal cobalt imido intermediates.

Reaction of TpR,MeCo(I) dinitrogen complexes (R = iPr, tBu) with trimethylsilyl azide yields structurally characterized compounds that imply the formation of reactive intermediates of the type TpR,MeCo=NSiMe3. These cobalt imido species apparently abstract hydrogen from the 3-substituent of the Tp-ligand, leading to the formation of amido complexes accompanied by either Co-C bond formation (R = tBu) or C-C bond formation (R = iPr).

Thiolate-bridged nickel-copper complexes: a binuclear model for the catalytic site of acetyl coenzyme a synthase?

Reaction of the nickel metalloligands [EtN2S2]Ni (EtN2S2, N,N'-diethyl-3,7-diazanonane-1,9-dithiolate) or K2[Ni(phmi)] (phmi, N,N'-1,2-phenylenebis(2-sulfanyl-2-methylpropionamide)) with [Cu(CH3CN)4]BF4 yields polynuclear complexes in which two copper(I) ions are bridged by the nickel metalloligands. Alternatively, reaction with the Cu(I) source, [(PhTttBu)Cu] (PhTttBu, phenyltris((tert-butylthio)methyl)borate), generates discrete binuclear NiCu complexes that may serve as models of the acetyl coenzyme A synthase active site. The binuclear species react reversibly with CO via rupture of the thiolate bridges.

Superoxo, mu-peroxo, and mu-oxo complexes from heme/O2 and heme-Cu/O2 reactivity: copper ligand influences in cytochrome c oxidase models.

The O(2)-reaction chemistry of 1:1 mixtures of (F(8))Fe(II) (1; F(8) = tetrakis(2,6-diflurorophenyl)porphyrinate) and [(L(Me(2))N)Cu(I)](+) (2; L(Me(2))N = N,N-bis(2-[2-(N',N'-4-dimethylamino)pyridyl]ethyl)methylamine) is described, to model aspects of the chemistry occurring in cytochrome c oxidase. Spectroscopic investigations, along with stopped-flow kinetics, reveal that low-temperature oxygenation of 1/2 leads to rapid formation of a heme-superoxo species (F(8))Fe(III)-(O(2)(-)) (3), whether or not 2 is present. Complex 3 subsequently reacts with 2 to form [(F(8))Fe(III)-(O(2)(2-))-Cu(II)(L(Me(2))N)](+) (4), which thermally converts to [(F(8))Fe(III)-(O)-Cu(II)(L(Me(2))N)](+) (5), which has an unusually bent (Fe-O-Cu) bond moiety.

Synthetic modeling of zinc thiolates: quantitative assessment of hydrogen bonding in modulating sulfur alkylation rates.

A series of mononuclear zinc thiolate complexes have been prepared and fully characterized. The reactions of the complexes with alkyl halides, leading to zinc halides and the corresponding thioethers, have been examined by kinetic methods. In toluene, the reactions obey a second-order rate law displaying activation parameters consistent with a S(N)2 attack of the zinc-bound thiolate on the carbon electrophile.

Variable character of O-O and M-O bonding in side-on (eta(2)) 1:1 metal complexes of O2.

The structures and the O-O and M-O bonding characters of a series of reported side-on (eta(2)) 1:1 metal complexes of O(2) are analyzed by using density functional theory calculations. Comparison of the calculated and experimental systems with respect to O-O bond distance, O-O stretching frequency, and O-O and M-O bond orders provides new insights into subtle influences relevant to O(2) activation processes in biology and catalysis. The degree of charge transfer from the generally electron-rich metals to the dioxygen fragment is found to be variable, such that there are species well described as superoxides, others well described as peroxides, and several cases having intermediate character.

The effect of a 3-benzyl group on the coordination chemistry of homoscorpionate ligands.

New homoscorpionate ligands containing a 3-benzyl substituent, hydrotris(3-benzyl-5-methylpyrazol-1-yl)borate, Tp(Bn,Me), and hydrotris(3-benzyl-4-phenylpyrazol-1-yl)borate, Tp(Bn,4Ph), have been synthesized, and the dynamic behavior of a number of metal complexes was studied by NMR. Structures of the complexes Tl[Tp(Bn,Me)], 1, Tl[Tp(Bn,4Ph)], 2, Co[Tp(Bn,Me)][Tp(Np)], 3, Mo[Tp(Bn,Me)](CO)(2)NO, 4, Co[Tp(Bn,4Ph)][Tp], 5, and Mo[Tp(Bn,Me)](CO)(2)(eta(3)-methallyl), 6, were determined by X-ray crystallography. In the Tp(Bn,Me) ligand, the benzyl group is freely rotating and provides less steric hindrance to the coordinated metal than a neopentyl group, but steric hindrance is increased in the Tp(Bn,4Ph) ligand, where the rotation of the benzyl substituent is restricted by the 4-phenyl substituent.

Synthesis and reactions of molybdenum triamidoamine complexes containing hexaisopropylterphenyl substituents.

We have synthesized a triamidoamine ligand ([(RNCH(2)CH(2))(3)N](3)(-)) in which R is 3,5-(2,4,6-i-Pr(3)C(6)H(2))(2)C(6)H(3) (hexaisopropylterphenyl or HIPT). The reaction between MoCl(4)(THF)(2) and H(3)[HIPTN(3)N] in THF followed by 3.1 equiv of LiN(SiMe(3))(2) led to formation of orange [HIPTN(3)N]MoCl.

Stereochemistry of palladium-mediated synthesis of PAMP-BH3: retention of configuration at P in formation of Pd-P and P-C bonds.

Treatment of Pd((S,S)-Chiraphos)(o-An)(I) (3, o-An = o-MeOC6H4) with either enantiomer of highly enantioenriched PH(Me)(Ph)(BH3) (1) gave the phosphido-borane complex Pd((S,S)-Chiraphos)(o-An)(P(Me)(Ph)(BH3)) (4) with retention of configuration at phosphorus, as shown by X-ray crystal structure determinations for both diastereomers of 4. Heating either diastereomer of 4 with diphenylacetylene gave Pd((S,S)-Chiraphos)(PhCCPh) (5) and P(o-An)(Me)(Ph)(BH3) (2) with retention of configuration at phosphorus.

Reaction of elemental sulfur with a copper(I) complex forming a trans-mu-1,2 end-on disulfide complex: new directions in copper-sulfur chemistry.

Elemental sulfur (S8) was found to react with [(TMPA)CuI(CH3CN)]+ to form the trans-mu-1,2 end-on disulfide complex [(TMPA)Cu-S-S-Cu(TMPA)]2+. The X-ray structure of this centrosymmetric disulfide complex shows a Cu(1)-S(1) bond length of 2.280(2) A and a S(1)-S(1A) bond length of 2.

Novel coordination of dicyanamide, [N(CN)2]-: preferential binding of the amide nitrogen.

CoII[N(CN)2]2(H2BiIm)2, 1, and [CoII[N(CN)2](H2BiIm)2]Cl, 2 (H2BiIm = 2,2'-biimidazole) have been structurally, spectroscopically, and magnetically characterized with both containing dicyanamides bound in unprecedented manners; namely, solely via the amide nitrogen for 1, and via an imide N forming 1-D helical chains for 2.

Tuning copper-dioxygen reactivity and exogenous substrate oxidations via alterations in ligand electronics.

Copper(I)-dioxygen adducts are important in biological and industrial processes. For the first time we explore the relationship between ligand electronics, CuI-O2 adduct formation and exogenous substrate reactivity. The copper(I) complexes [CuI(R-MePY2)]+ (1R, where R = Cl, H, MeO, Me2N) were prepared; where R-MePY2 are 4-pyridyl substituted bis[2-(2-pyridyl)ethyl]methylamine chelates.

A new bis(imidazolyl)(alkylthiolate) tripodal ligand and the spontaneous formation of a disulfide-linked, hydroxo-bridged dinuclear zinc complex.

The new sterically encumbered, tripodal N2S(alkylthiolate) ligand, LIm2SH, has been synthesized and used to prepare [(LIm2S)ZnCH3], which upon protonolysis under acidic conditions leads to the synthesis of a novel dinucleating ligand and a zinc dimer with an unusual structure.

Hydrogen atom abstraction by a chromium IV oxo complex derived from O2.

The Cr(III) hydroxide [TptBu,MeCr(OH)(pz'H)] BARF (1) is produced by reaction of [TptBu,MeCr(pz'H)]BARF with [TptBu,MeCr(O2)(pz'H)]BARF or oxygen atom donors ONMe3 or PhIO in Et2O. However, reaction of [TptBu,MeCr(pz'H)]BARF with PhIO in pure CH2Cl2 yields the Cr(IV) oxo complex [TptBu,MeCr(O)(pz'H)]BARF (2). 2 abstracts hydrogen atoms from organic molecules with weak C-H bonds to form 1.

Lanthanide complexes of [alpha-2-P2W17O61]10-: solid state and solution studies.

We have isolated the 1:1 Ln:[alpha-2-P2W17O61]10- complexes for a series of lanthanides. The single-crystal X-ray structure of the Eu3+ analogue reveals two identical [Eu(H2O)3(alpha-2-P2W17O61)]7- moieties connected through two Eu-O-W bonds, one from each polyoxometalate unit. An inversion center relates the two polyoxometalate units.

Cooperative host/guest interactions via counterion assisted chelation: pseudorotaxanes from supramolecular cryptands.

Addition of di- or tritopic hydrogen bond accepting anions to solutions of bis(5-hydroxymethyl-1,3-phenylene)-32-crown-10 and paraquat di(hexafluorophosphate) serves to enhance host/guest interaction. In particular, addition of Et4N+CF3COO- effectively boosts Ka 14-fold, as estimated by 1H NMR studies. Similar increases in apparent Ka values are observed upon addition of n-Bu4N+OTs-.