Publications by authors named "Arda H"

Article Synopsis
  • Identified noncoding driver mutations in pancreatic ductal adenocarcinoma (PDAC) by mapping accessible chromatin regions and histone modifications in pancreatic cell lines and tissues, integrating this data with whole-genome mutations from 506 PDAC cases.
  • *From 3,614 noncoding somatic mutations (NCSMs) found, 178 were shown to significantly affect gene activity, highlighting their potential role in cancer progression.
  • *Further experiments pinpointed specific genes impacted by these mutations, with a focus on one gene (KLF9) that showed reduced expression due to interference from NCSMs, establishing it as a possible PDAC driver gene.
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Genetic and epigenetic variations in regulatory enhancer elements increase susceptibility to a range of pathologies. Despite recent advances, linking enhancer elements to target genes and predicting transcriptional outcomes of enhancer dysfunction remain significant challenges. Using 3D chromatin conformation assays, we generated an extensive enhancer interaction dataset for the human pancreas, encompassing more than 20 donors and five major cell types, including both exocrine and endocrine compartments.

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The Hippo pathway plays a central role in tissue development and homeostasis. However, the function of Hippo in pancreatic endocrine development remains obscure. Here, we generated novel conditional genetically engineered mouse models to examine the roles of Hippo pathway-mediated YAP1/TAZ inhibition in the development stages of endocrine specification and differentiation.

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  • - This study examined choroidal thickness in children with unilateral strabismic amblyopia using SD-EDI-OCT, comparing 25 affected children to 20 healthy peers to assess ocular differences.
  • - Findings revealed that while the mean choroidal thickness in the amblyopic children was similar in both affected and fellow eyes, it was significantly thicker in both when compared to control eyes across various measurements.
  • - A negative correlation was found between subfoveal choroidal thickness and axial length, but no links were established between thickness and age or visual acuity.
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Cell type-specific enhancers are critically important for lineage specification. The mechanisms that determine cell-type specificity of enhancer activity, however, are not fully understood. Most current models for how enhancers function invoke physical proximity between enhancer elements and their target genes.

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Purpose: Behçet's disease (BD) is an autoimmune chronic systemic inflammatory disease characterized by a versatile clinical spectrum. Growth arrest specific protein 6 (GAS6)/soluble AXL (sAXL) signaling pathway draws attention in the resolution of inflammation, and its deficiency is associated with chronic inflammatory, autoimmune diseases, as well as clearance of apoptotic cells by phagocytes - efferocytosis. In this study, it was aimed to investigate whether GAS6/sAXL, interleukin (IL)-10, nitric oxide (NO), and BCL-2 levels were associated with inflammation and efferocytosis contributes to the pathogenesis of BD.

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Purpose To determine the etiology and anatomic localization of uveitis, the frequency of intraocular pressure (IOP) elevation, and the type of secondary glaucoma and to assess the medical, surgical, and postoperative complications in adult and pediatric patients with acute or chronic uveitis. Methods A total of 307 eyes of 186 patients who were followed up in the Uvea-Behçet Unit of the Ophthalmology Department, Erciyes University, Turkey, were included in the study. Demographic, ocular, and systemic data were recorded; ophthalmological examinations were performed; and recurrences and complications of uveitis were identified.

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The standard of care to treat small- and medium-sized macular holes (<400 µm diameter) consists of a conventional transconjunctival sutureless pars plana vitrectomy followed by ILM peeling and endotamponade, mainly with gas or in some cases with silicone oil, resulting in closure rates of over 90% and good functional results. Large (>400 µm diameter), chronic and persistent macular holes remain a surgical challenge since closure rates and functional results decrease with larger macular hole diameters. Various modifications of the conventional surgical technique were introduced to improve anatomic and functional success in refractory cases not suitable for conventional macular hole surgery.

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  • The study aims to compare the vascular properties of optic discs in patients with crowded discs versus control subjects using optical coherence tomography angiography (OCT-A).
  • Thirty patients with crowded discs and 47 control subjects were included, with various measurements taken from the optic discs, including RPC density and pRNFL thickness.
  • Results showed that while some measurements were similar, crowded optic discs had a higher RPC density inside the disc and lower PPCMv density in the inner-hemisuperior region.
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Background: The human pancreas is composed of specialized cell types producing hormones and enzymes critical to human health. These specialized functions are the result of cell type-specific transcriptional programs which manifest in cell-specific gene expression. Understanding these programs is essential to developing therapies for pancreatic disorders.

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Histone deacetylase inhibitors (HDACi) are part of a growing class of epigenetic therapies used for the treatment of cancer. Although HDACis are effective in the treatment of T-cell lymphomas, treatment of solid tumors with this class of drugs has not been successful. Overexpression of the multidrug resistance protein P-glycoprotein (P-gp), encoded by ABCB1, is known to confer resistance to the HDACi romidepsin in vitro, yet increased ABCB1 expression has not been associated with resistance in patients, suggesting that other mechanisms of resistance arise in the clinic.

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  • The study aimed to examine the superficial and deep vascular characteristics of the optic disc in patients with retrobulbar optic neuritis using optical coherence tomography angiography (OCT-A).
  • Nineteen patients with unilateral non-infectious retrobulbar neuritis were analyzed, comparing the affected eyes to healthy contralateral eyes, with various optic nerve parameters assessed through OCT-A.
  • Results showed significant decreases in certain superficial capillary densities in eyes with optic neuritis, while other parameters such as PPCMv density remained unchanged.
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Objectives: The primary objective of this study was to evaluate the agreement of visual acuity (VA) obtained with the sweep visual evoked potential (sVEP) method with the VA obtained with the Snellen chart. The secondary objective was to examine the effect of age and gender on agreement.

Materials And Methods: Best corrected VAs of subjects were recorded with the Snellen chart, and sVEP testing was performed according to the recommendations of the International Society for Clinical Electrophysiology of Vision (ISCEV).

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  • The study aimed to examine changes in the choroid of patients with ocular and non-ocular Behçet disease using measures like choroidal vascularity index (CVI) and choroidal thickness (ChT).
  • A total of 148 participants were evaluated, including 68 patients with ocular Behçet disease, 40 with non-ocular Behçet disease, and 40 healthy individuals, with results showing significant decreases in ChT in both types of Behçet disease compared to the controls.
  • Findings suggest that ocular Behçet disease impacts choroidal vasculature due to uveitis, while systemic inflammation in non-ocular cases does not, indicating that ChT and CVI could serve as potential
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  • A new algorithmic "naming-meshing" system was developed to help ophthalmologists distinguish between hypopyon and pseudohypopyon for quicker diagnosis and treatment of anterior chamber sediment.
  • A literature review was conducted focusing on strategies for both ophthalmologists and non-ophthalmologists to accurately identify and manage cases of these conditions.
  • The study examined various sediment characteristics (like shape, location, and color) and associated clinical findings to better guide diagnosis, emphasizing the importance of understanding these features, especially since the conditions mainly affect younger patients.
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  • - This study examines the use of transparent corneal lenticules as grafts in surgical treatment for primary pterygium, taken during small incision lenticule extraction (SMILE) surgery.
  • - Five patients underwent the procedure, with all cases showing no rejection or complications, and positive recovery after six months.
  • - The findings indicate that using these lenticules as grafts could be a safe, effective, and economical alternative for treating primary pterygium.
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  • The study assessed the effectiveness and safety of adalimumab (ADA) in treating non-infectious uveitis (NIU) that isn't responsive to standard medications.
  • A total of 24 patients, primarily with ocular Behçet syndrome, received varying doses of ADA and were evaluated for improvements in vision and inflammation at multiple time points over 24 weeks.
  • Results showed significant improvements in visual acuity, inflammation metrics, and macular thickness without any serious side effects, indicating ADA's potential as a preferred treatment option for NIU in young patients.
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Background: We investigated whether the photopic negative response (PhNR) in the electroretinogram (ERG) was affected in Parkinson's disease (PD) patients and whether it was associated with retinal changes on optical coherence tomography (OCT).

Methods: Thirty-two patients with PD and 31 age and sex-matched healthy controls from a single tertiary centre were included in the study. Hoehn and Yahr scale scores and the presence of REM sleep behaviour were recorded.

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Objective: To compare the intraocular pressure (IOP)-lowering effect of different types of surgery available in the literature using a network meta-analysis (NMA) based on a systematic review.

Methods: PubMed and the Cochrane database were searched. Randomized clinical trials involving surgical interventions for high IOP for PAC (primary angle closure) or PACG (primary angle closure glaucoma) were included.

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Background and aim The use of non-steroidal anti-inflammatory drugs in animals decreases the incidence of posterior capsular opacification (PCO) following cataract surgery. We evaluated the rate of PCO in patients with cataract surgery and foldable "in the bag" posterior chamber intraocular lens (PC-IOL) implantation treated with combined dexamethasone 0.1% ketorolac tromethamine 0.

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To report perioperative findings of patients with multiple failed-dacryocystorhinostomy (DCR) and to determine the success rate of revision external (rEx-DCR) performed by a modified technique. Thirty-one eyes of 31 patients (19 women, 12 men) with recurrent dacryocystitis or epiphora following at least one previous failed-DCR were assessed regarding the time from initial surgery to recurrence and revision surgery, type of primary surgery (endoscopic, transcanalicular, Ex-DCR), recurrence number, stent usage and the success rate. Relief of epiphora and positive dye test were established as functional and anatomical successes, respectively.

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  • Traditional repair for large congenital eyelid defects involves complex flap-graft techniques that can block vision in young children for extended periods.
  • Recent studies indicate that a simpler "one-step" approach using a bilamellar autograft—taken from another eyelid—has been successful in both animals and humans.
  • A case involving a 6-month-old infant showed good results with this technique: the graft survived without complications and the parents were satisfied, highlighting it as an efficient and cost-effective alternative for eyelid reconstruction in infants.
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  • The study aimed to compare capillary vascular status in crowded versus normal optic discs using optical coherence tomography angiography (OCT-A).
  • It involved 101 eyes, with 51 having crowded discs and 50 having normal discs, measuring various vascular densities around the optic disc and within it.
  • The results showed no significant difference in vascular density around the discs between crowded and normal optic discs, but inside the crowded discs, vascular density was higher, indicating that smaller discs can still maintain their vascular structures despite size constraints.
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