Atomistic simulations are used to characterize the molecular dynamics (MD) of alkyl chains with different functionalizations in different water/acetonitrile mixtures (80/20 and 50/50). Starting from fully equilibrated solvent systems (flat density profile for both components), microheterogeneous structuring of the solvent in the chromatographic system is found for both mixtures. Depending on the functionalization of the alkyl chain (nitrile, amide, nitro, phenyl), differences in the density profiles of the two solvents (water/acetonitrile), the effective width of the stationary phase and the solvent gradients in the overlap region are observed.
View Article and Find Full Text PDFFully atomistic simulations are used to characterize the molecular dynamics (MD) of acridine orange (3,6-dimethylaminoacridine) at a chromatographic interface. Multiple 1 ns MD simulations were performed for acridine orange at the interface between three different acetonitrile/water mixtures (0/100, 20/80, and 50/50) with C8 and C18 alkyl chains. The diffusion coefficient, D, of acridine orange in pure solvent was found to be 4 times smaller at the water/C18 interface (D = 0.
View Article and Find Full Text PDFThe structures and infrared spectra of protonated ammonia clusters NH(4+)(NH3)n, for n < or = 8, are investigated using density functional-theory (DFT) calculations and semiempirical DFT/molecular dynamics simulations. For n < 5 the clusters are found to be mostly stable up to 100 K, while the larger clusters (n > or = 5) isomerize. Temperature effects are taken into account by performing ab initio molecular dynamics simulations with the computationally tractable self-consistent charges density functional tight-binding method.
View Article and Find Full Text PDFPrevious work testing density functionals for use in calculating high-spin-low-spin energy differences, deltaE(HL), for iron(II) spin-crossover transitions has tended to conclude that only properly reparametrized hybrid functionals can predict deltaE(HL) since it seems to depend critically on a correct description of the electron pairing energy governed by the exchange term. Exceptions to this rule are the previous three papers (I, II, and III in the present series of papers) where it was found that modern generalized gradient approximations (GGAs) and meta-GGAs could do as well as hybrid functionals, if not better, for this type of problem. In the present paper, we extend these previous studies to five more molecules which are too large to treat with high-quality ab initio calculations, namely, the series [Fe(L)('NHS(4)')], where NHS(4)=2.
View Article and Find Full Text PDFIn the iron(II) low-spin complex [Fe(bpy)3]2+, the zero-point energy difference between the 5T2g(t4(2g)e2g) high-spin and the 1A(1g)(t(6)2g) low-spin states, Delta(E)0HL, is estimated to lie in the range of 2500-5000 cm(-1). This estimate is based on the low-temperature dynamics of the high-spin-->low-spin relaxation following the light-induced population of the high-spin state and on the assumption that the bond-length difference between the two states Delta(r)HL is equal to the average value of approximately 0.2 A, as found experimentally for the spin-crossover system.
View Article and Find Full Text PDFThe ability of different density functionals to describe the structural and energy differences between the high- [(5)T(2g):(t(2g))(4)(e(g))(2)] and low- [(1)A(1g):(t(2g))(6)(e(g))(0)] spin states of small octahedral ferrous compounds is studied. This work is an extension of our previous study of the hexaquoferrous cation, [Fe(H(2)O)(6)](2+), [J. Chem.
View Article and Find Full Text PDFA comparison of density functionals is made for the calculation of energy and geometry differences for the high- [(5)T(2g): (t(2g))(4)(e(g))(2)] and low- [(1)A(1g): (t(2g))(6)(e(g))(0)] spin states of the hexaquoferrous cation [Fe(H(2)O)(6)](2+). Since very little experimental results are available (except for crystal structures involving the cation in its high-spin state), the primary comparison is with our own complete active-space self-consistent field (CASSCF), second-order perturbation theory-corrected complete active-space self-consistent field (CASPT2), and spectroscopy-oriented configuration interaction (SORCI) calculations. We find that generalized gradient approximations (GGAs) and the B3LYP hybrid functional provide geometries in good agreement with experiment and with our CASSCF calculations provided sufficiently extended basis sets are used (i.
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