We characterize a system of hard spheres with a simple collision rule that breaks time-reversal symmetry but conserves energy. The collisions lead to an achiral, isotropic, and homogeneous stationary state whose properties are determined in simulations and compared to an approximate theory originally developed for elastic hard spheres. In the nonequilibrium fluid state, velocities are correlated, a phenomenon known from other nonequilibrium stationary states.
View Article and Find Full Text PDFIt has recently been reported that bacteria, such as Escherichia coli Bhattacharjee and Datta, Nat. Commun. 10, 2075 (2019).
View Article and Find Full Text PDFWe analyze the flow curves of a two-dimensional assembly of granular particles which are interacting via frictional contact forces. For packing fractions slightly below jamming, the fluid undergoes a large scale instability, implying a range of stress and strain rates where no stationary flow can exist. Whereas small systems were shown previously to exhibit hysteretic jumps between the low and high stress branches, large systems exhibit continuous shear thickening arising from averaging unsteady, spatially heterogeneous flows.
View Article and Find Full Text PDFThe motion of active polymers in a two-dimensional porous medium is shown to depend critically on flexibility, activity, and degree of polymerization. For a given Péclet number, we observe a transition from localization to diffusion as the stiffness of the chains is increased. Whereas stiff chains move almost unhindered through the porous medium, flexible ones spiral and get stuck.
View Article and Find Full Text PDFConsidering a granular fluid of inelastic smooth hard spheres, we discuss the conditions delineating the rheological regimes comprising Newtonian, Bagnoldian, shear thinning, and shear thickening behavior. Developing a kinetic theory, valid at finite shear rates and densities around the glass transition density, we predict the viscosity and Bagnold coefficient at practically relevant values of the control parameters. The determination of full flow curves relating the shear stress σ to the shear rate γ[over ˙] and predictions of the yield stress complete our discussion of granular rheology derived from first principles.
View Article and Find Full Text PDFWe suggest a simple model for reversible cross-links, binding, and unbinding to/from a network of semiflexible polymers. The resulting frequency dependent response of the network to an applied shear is calculated via Brownian dynamics simulations. It is shown to be rather complex with the time scale of the linkers competing with the excitations of the network.
View Article and Find Full Text PDFWe develop a generalized hydrodynamic theory, which can account for the build-up of long-ranged and long-lived shear stress correlations in supercooled liquids as the glass transition is approached. Our theory is based on the decomposition of tensorial stress relaxation into fast microscopic processes and slow dynamics due to conservation laws. In the fluid, anisotropic shear stress correlations arise from the tensorial nature of stress.
View Article and Find Full Text PDFA theory for the nonlocal shear stress correlations in supercooled liquids is derived from first principles. It captures the crossover from viscous to elastic dynamics at an idealized liquid to glass transition and explains the emergence of long-ranged stress correlations in glass, as expected from classical continuum elasticity. The long-ranged stress correlations can be traced to the coupling of shear stress to transverse momentum, which is ignored in the classic Maxwell model.
View Article and Find Full Text PDFWe analyze the stretching elasticity of a wormlike chain with a tension discontinuity resulting from a Hookean spring connecting its backbone to a fixed point. The elasticity of isolated semiflexible filaments has been the subject in a significant body of literature, primarily because of its relevance to the mechanics of biological matter. In real systems, however, these filaments are usually part of supramolecular structures involving cross-linkers or molecular motors, which cause tension discontinuities.
View Article and Find Full Text PDFA two-dimensional bidisperse granular fluid is shown to exhibit pronounced long-ranged dynamical heterogeneities as dynamical arrest is approached. Here we focus on the most direct approach to study these heterogeneities: we identify clusters of slow particles and determine their size, Nc, and their radius of gyration, RG. We show that , providing direct evidence that the most immobile particles arrange in fractal objects with a fractal dimension, df, that is observed to increase with packing fraction ϕ.
View Article and Find Full Text PDFA two-dimensional dense fluid of frictional grains is shown to exhibit time-chaotic, spatially heterogeneous flow in a range of stress values, σ, chosen in the unstable region of s-shaped flow curves. Stress-controlled simulations reveal a phase diagram with reentrant stationary flow for small and large stress σ. In between, no steady flow state can be reached, instead the system either jams or displays time-dependent heterogeneous strain rates γ(r,t).
View Article and Find Full Text PDFThe actin and microtubule networks form the dynamic cytoskeleton. Network dynamics is driven by molecular motors applying force onto the networks and the interactions between the networks. Here we assay the dynamics of centrosomes in the scale of seconds as a proxy for the movement of microtubule asters.
View Article and Find Full Text PDFCells moving on a two dimensional substrate generate motion by polymerizing actin filament networks inside a flat membrane protrusion. New filaments are generated by branching off existing ones, giving rise to branched network structures. We investigate the force-extension relation of branched filaments, grafted on an elastic structure at one end and pushing with the free ends against the leading edge cell membrane.
View Article and Find Full Text PDFWe study analytically the intricate phase behavior of cross-linked AB diblock copolymer melts, which can undergo two main phase transitions due to quenched random constraints. Gelation, i.e.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
May 2014
We propose a phase diagram for the shear flow of dry granular particles in two dimensions based on simulations and a phenomenological Landau theory for a nonequilibrium first-order phase transition. Our approach incorporates both frictional as well as frictionless particles. The most important feature of the frictional phase diagram is reentrant flow and a critical jamming point at finite stress.
View Article and Find Full Text PDFLarge-scale simulations of two-dimensional bidisperse granular fluids allow us to determine spatial correlations of slow particles via the four-point structure factor S(4)(q,t). Both cases, elastic (ϵ=1) and inelastic (ϵ<1) collisions, are studied. As the fluid approaches structural arrest, i.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
April 2014
When pulling a particle in a driven granular fluid with constant force Fex, the probe particle approaches a steady-state average velocity v. This velocity and the corresponding friction coefficient of the probe ζ=Fex/v are obtained within a schematic model of mode-coupling theory and compared to results from event-driven simulations. For small and moderate drag forces, the model describes the simulation results successfully for both the linear as well as the nonlinear region: The linear response regime (constant friction) for small drag forces is followed by shear thinning (decreasing friction) for moderate forces.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
November 2013
We investigate the long time dynamics of a strong glass former, SiO(2), below the glass transition temperature by averaging single-particle trajectories over time windows which comprise roughly 100 particle oscillations. The structure on this coarse-grained time scale is very well defined in terms of coordination numbers, allowing us to identify ill-coordinated atoms, which are called defects in the following. The most numerous defects are O-O neighbors, whose lifetimes are comparable to the equilibration time at low temperature.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
October 2013
We explore the effect of an attractive interaction between parallel-aligned polymers which are perpendicularly grafted on a substrate. Such an attractive interaction could be due to, e.g.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
September 2013
Aiming at the mechanical properties of cross-linked biopolymers, we set up and analyze a model of two weakly bending wormlike chains subjected to a tensile force, with regularly spaced inter-chain bonds (cross-links) represented by harmonic springs. Within this model, we compute the force-extension curve and the differential stiffness exactly and discuss several limiting cases. Cross-links effectively stiffen the chain pair by reducing thermal fluctuations transverse to the force and alignment direction.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
August 2013
Large-scale simulations and analytical theory have been combined to obtain the nonequilibrium velocity distribution, f(v), of randomly accelerated particles in suspension. The simulations are based on an event-driven algorithm, generalized to include friction. They reveal strongly anomalous but largely universal distributions, which are independent of volume fraction and collision processes, which suggests a one-particle model should capture all the essential features.
View Article and Find Full Text PDFA freely falling stream of weakly cohesive granular particles is modeled and analyzed with the help of event driven simulations and continuum hydrodynamics. The former show a breakup of the stream into droplets, whose size is measured as a function of cohesive energy. Extensional flow is an exact solution of the one-dimensional Navier-Stokes equation, corresponding to a strain rate, decaying like t(-1) from its initial value, γ[over ˙](0).
View Article and Find Full Text PDFThe topological effect of noncrossability of long flexible macromolecules is effectively described by a slip-spring model, which represents entanglements by local, pairwise, translationally invariant interactions that do not alter any equilibrium properties. We demonstrate that the model correctly describes many aspects of the dynamical and rheological behavior of entangled polymer liquids, such as segmental mean-square displacements and shear thinning, in a computationally efficient manner. Furthermore, the model can account for the reduction of entanglements under shear.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
September 2011
We use event driven simulations to analyze glassy dynamics as a function of density and energy dissipation in a two-dimensional bidisperse granular fluid under stationary conditions. Clear signatures of a glass transition are identified, such as an increase of relaxation times over several orders of magnitude. As the inelasticity is increased, the glass transition is shifted to higher densities, and the precursors of the transition become less and less pronounced, in agreement with a recent mode-coupling theory.
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
May 2011
We inquire into the possible coexistence of macroscopic and microstructured phases in random Q-block copolymers built of incompatible monomer types A and B with equal average concentrations. In our microscopic model, one block comprises M identical monomers. The block-type sequence distribution is Markovian and characterized by the correlation λ.
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