Publications by authors named "Ankita S Batra"

Background: The metabolism of tryptophan to kynurenines (KYN) by indoleamine-2,3-dioxygenase or tryptophan-2,3-dioxygenase is a key pathway of constitutive and adaptive tumor immune resistance. The immunosuppressive effects of KYN in the tumor microenvironment are predominantly mediated by the aryl hydrocarbon receptor (AhR), a cytosolic transcription factor that broadly suppresses immune cell function. Inhibition of AhR thus offers an antitumor therapy opportunity via restoration of immune system functions.

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PIK3CA, encoding the PI3Kα isoform, is the most frequently mutated oncogene in estrogen receptor (ER)-positive breast cancer. Isoform-selective PI3K inhibitors are used clinically but intrinsic and acquired resistance limits their utility. Improved selection of patients that will benefit from these drugs requires predictive biomarkers.

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Lithium, commonly used to treat bipolar disorder, potentiates the ability of the muscarinic agonist pilocarpine to induce seizures in rodents. As this potentiation by lithium is reversed by the administration of myo-inositol, the potentiation may be mediated by inhibition of inositol monophosphatase (IMPase), a known target of lithium. Recently, we demonstrated that ebselen is a 'lithium mimetic' in regard to behaviours in both mice and man.

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Due to compromised homologous recombination (HR) repair, BRCA1- and BRCA2-mutated tumours accumulate DNA damage and genomic rearrangements conducive of tumour progression. To identify drugs that target specifically BRCA2-deficient cells, we screened a chemical library containing compounds in clinical use. The top hit was chlorambucil, a bifunctional alkylating agent used for the treatment of chronic lymphocytic leukaemia (CLL).

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Activation of the mitogen-activated protein kinase (MAPK) pathway is frequent in cancer. Drug development efforts have been focused on kinases in this pathway, most notably on RAF and MEK. We show here that MEK inhibition activates JNK-JUN signaling through suppression of DUSP4, leading to activation of HER Receptor Tyrosine Kinases.

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Background: Patient-Derived Tumour Xenografts (PDTXs) have emerged as the pre-clinical models that best represent clinical tumour diversity and intra-tumour heterogeneity. The molecular characterization of PDTXs using High-Throughput Sequencing (HTS) is essential; however, the presence of mouse stroma is challenging for HTS data analysis. Indeed, the high homology between the two genomes results in a proportion of mouse reads being mapped as human.

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Article Synopsis
  • Maintenance of genome integrity relies on cooperation between Fanconi anemia (FA) and homologous recombination (HR) repair pathways, making cells sensitive to DNA damage from acetaldehyde, especially those lacking FANCD2.
  • Inactivation of HR factors like BRCA1, BRCA2, or RAD51 increases sensitivity to acetaldehyde, indicating that even with a functioning FA pathway, cells can still be vulnerable to this type of DNA damage.
  • The study suggests that inhibiting enzymatic detoxification of acetaldehyde, particularly using disulfiram, could selectively target and eliminate BRCA1/2-deficient cells and tumors, presenting a new potential therapeutic strategy.
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Despite remarkable advances in our understanding of the drivers of human malignancies, new targeted therapies often fail to show sufficient efficacy in clinical trials. Indeed, the cost of bringing a new agent to market has risen substantially in the last several decades, in part fuelled by extensive reliance on preclinical models that fail to accurately reflect tumour heterogeneity. To halt unsustainable rates of attrition in the drug discovery process, we must develop a new generation of preclinical models capable of reflecting the heterogeneity of varying degrees of complexity found in human cancers.

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Article Synopsis
  • Breast cancer research requires models that accurately reflect the variety within tumors, and we've developed a significant collection of patient-derived tumor xenografts (PDTXs) that maintain the original tumors' characteristics in mice.
  • Our method integrates in vivo growth of PDTXs with short-term cultures of tumor cells derived from these xenografts, successfully preserving the complex genomic structure found in the original tumors.
  • We have created a biobank that serves as a valuable resource for pharmacogenomic studies, enabling the exploration of drug responses and the identification of biomarkers for treatment efficacy or resistance.
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