Publications by authors named "Anja J H van Dijken"

Article Synopsis
  • The plant hormone abscisic acid (ABA) plays a key role in regulating plant development and stress responses by triggering a complex gene regulatory network involving many transcription factors (TFs) and genes.
  • An RNA-seq time series identified 7151 differentially expressed genes in response to ABA treatment, which were organized into 44 coexpressed modules responsible for various biological functions.
  • The study further analyzed TF regulation and interaction within the ABA gene regulatory network, highlighting the significance of the bZIP TF family and identifying GT3a as a positive regulator of drought tolerance, validated by drought assays.
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Carbonic anhydrases CA1 and CA4 attenuate plant immunity and can contribute to altered disease resistance levels in response to changing atmospheric CO conditions. β-Carbonic anhydrases (CAs) play an important role in CO metabolism and plant development, but have also been implicated in plant immunity. Here we show that the bacterial pathogen Pseudomonas syringae and application of the microbe-associated molecular pattern (MAMP) flg22 repress CA1 and CA4 gene expression in Arabidopsis thaliana.

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The root microbiome consists of commensal, pathogenic, and plant-beneficial microbes [1]. Most members of the root microbiome possess microbe-associated molecular patterns (MAMPs) similar to those of plant pathogens [2]. Their recognition can lead to the activation of host immunity and suppression of plant growth due to growth-defense tradeoffs [3, 4].

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Jasmonic acid (JA) is a critical hormonal regulator of plant growth and defense. To advance our understanding of the architecture and dynamic regulation of the JA gene regulatory network, we performed a high-resolution RNA-seq time series of methyl JA-treated at 15 time points over a 16-h period. Computational analysis showed that methyl JA (MeJA) induces a burst of transcriptional activity, generating diverse expression patterns over time that partition into distinct sectors of the JA response targeting specific biological processes.

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Bacterial flagellin molecules are strong inducers of innate immune responses in both mammals and plants. The opportunistic pathogen Pseudomonas aeruginosa secretes an alkaline protease called AprA that degrades flagellin monomers. Here, we show that AprA is widespread among a wide variety of bacterial species.

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In resurrection plants and yeast, trehalose has a function in stress protection, but the absence of measurable amounts of trehalose in other plants precludes such a function. The identification of a trehalose biosynthetic pathway in angiosperms raises questions on the function of trehalose metabolism in nonresurrection plants. We previously identified a mutant in the Arabidopsis trehalose biosynthesis gene AtTPS1.

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Article Synopsis
  • The study investigates the role of trehalose biosynthesis in Arabidopsis through a mutant (tps1) that has a disrupted gene responsible for the synthesis, leading to embryo lethality.
  • The mutant embryos show normal initial development but suffer from halted growth and issues with cell expansion and storage accumulation, indicating the importance of trehalose during seed maturation.
  • Unlike yeast, where trehalose regulates sugar influx into glycolysis, the findings suggest a unique mechanism in plants for regulating sugar metabolism and embryo development that does not involve inhibition of hexokinase.
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