Publications by authors named "Andrew Stuart"

Unlabelled: VRC01-class broadly neutralizing antibodies (bnAbs) have been isolated from people with HIV-1, but they have not yet been elicited by vaccination. They are extensively somatically mutated and sometimes accumulate CDRL1 deletions. Such indels may allow VRC01-class antibodies to accommodate the glycans expressed on a conserved N276 N-linked glycosylation site in loop D of the gp120 subunit.

View Article and Find Full Text PDF

We have demonstrated high-speed, super-resolution infrared (IR) spectroscopy and chemical imaging of autofluorescent biomaterials and organisms using camera-based widefield photothermal detection that takes advantage of temperature-dependent modulations of autofluorescent emission. A variety of biological materials and photosynthetic organisms exhibit strong autofluorescence emission under ultraviolet excitation and the autofluorescent emission has a very strong temperature dependence, of order 1%/K. Illuminating a sample with pulses of IR light from a wavelength-tunable laser source causes periodic localized sample temperature increases that result in a corresponding transient decrease in autofluorescent emission.

View Article and Find Full Text PDF

We consider the problem of filtering dynamical systems, possibly stochastic, using observations of statistics. Thus, the computational task is to estimate a time-evolving density ρ(v,t) given noisy observations of the true density ρ†; this contrasts with the standard filtering problem based on observations of the state v. The task is naturally formulated as an infinite-dimensional filtering problem in the space of densities ρ.

View Article and Find Full Text PDF

Background: We report clinical, epidemiological, and laboratory features of a large diarrhea outbreak caused by a novel subtype during British military training in Kenya between February and April 2022.

Methods: Data were collated from diarrhea cases, and fecal samples were analyzed on site using the multiplex polymerase chain reaction (PCR) BioFire FilmArray. Water was tested using Colilert kits (IDEXX, UK).

View Article and Find Full Text PDF

Many biological signaling pathways employ proteins that competitively dimerize in diverse combinations. These dimerization networks can perform biochemical computations, in which the concentrations of monomers (inputs) determine the concentrations of dimers (outputs). Despite their prevalence, little is known about the range of input-output computations that dimerization networks can perform (their "expressivity") and how it depends on network size and connectivity.

View Article and Find Full Text PDF
Article Synopsis
  • Forecasting blood glucose (BG) levels using routinely collected data can enhance glycemic management, but challenges arise due to the complex non-linear nature of BG dynamics and limited data availability.
  • A new approach is proposed, utilizing a linear stochastic differential equation to simplify BG regulation modeling, which allows for better parameter estimation and more accurate forecasts, tailored for individuals with type 2 diabetes or in intensive care settings.
  • The model includes elements representing glucose regulation, nutrition, and insulin effects, providing personalized predictions for BG levels and variations, which could significantly aid in managing blood glucose as part of a control system.
View Article and Find Full Text PDF
Article Synopsis
  • Lung fibrosis develops through immune system activation, leading to inflammation and the production of growth factors like TGFβ1, which promotes abnormal extracellular matrix formation.
  • In the process, resident macrophages are replaced by newly recruited monocyte-derived macrophages, which contribute to fibrosis by releasing harmful cytokines and altering the matrix structure.
  • Researchers propose using mannosylated albumin nanoparticles to target and deliver TGFβ1 small-interfering RNA (siRNA) specifically to these profibrotic macrophages, offering a potential new treatment approach for lung fibrosis.
View Article and Find Full Text PDF

The complex involvement of neutrophils in inflammatory diseases makes them intriguing but challenging targets for therapeutic intervention. Here, we tested the hypothesis that varying endocytosis capacities would delineate functionally distinct neutrophil subpopulations that could be specifically targeted for therapeutic purposes. By using uniformly sized (∼120 nm in diameter) albumin nanoparticles (ANP) to characterize mouse neutrophils , we found two subsets of neutrophils, one that readily endocytosed ANP (ANP neutrophils) and another that failed to endocytose ANP (ANP population).

View Article and Find Full Text PDF

Determinants of protective immunity against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection require the development of well-standardized, reproducible antibody assays. This need has led to the emergence of a variety of neutralization assays. Head-to-head evaluation of different SARS-CoV-2 neutralization platforms could facilitate comparisons across studies and laboratories.

View Article and Find Full Text PDF

SARS-CoV-2 is one of three coronaviruses that have crossed the animal-to-human barrier and caused widespread disease in the past two decades. The development of a universal human coronavirus vaccine could prevent future pandemics. We characterize 198 antibodies isolated from four COVID-19+ subjects and identify 14 SARS-CoV-2 neutralizing antibodies.

View Article and Find Full Text PDF

Background: During audiologic evaluations, an examination of interaural asymmetry is commonly evaluated. To date, however, interaural differences for tympanometric indices have not been reported for adults. Without documented tympanometric right-left differences, one cannot determine if asymmetries are normal or are indicative of significant clinical asymmetries.

View Article and Find Full Text PDF

SARS-CoV-2 is one of three coronaviruses that have crossed the animal-to-human barrier in the past two decades. The development of a universal human coronavirus vaccine could prevent future pandemics. We characterized 198 antibodies isolated from four COVID19+ subjects and identified 14 SARS-CoV-2 neutralizing antibodies.

View Article and Find Full Text PDF

Determinants of protective immunity against SARS-CoV-2 infection require the development of well-standardized, reproducible antibody assays to be utilized in concert with clinical trials to establish correlates of risk and protection. This need has led to the appearance of a variety of neutralization assays used by different laboratories and companies. Using plasma samples from COVID-19 convalescent individuals with mild-to-moderate disease from a localized outbreak in a single region of the western US, we compared three platforms for SARS-CoV-2 neutralization: assay with live SARS-CoV-2, pseudovirus assay utilizing lentiviral (LV) and vesicular stomatitis virus (VSV) packaging, and a surrogate ELISA test.

View Article and Find Full Text PDF

The effect of age on release from masking (RFM) was examined using cortical auditory evoked potentials (CAEPs). Two speech-in-noise paradigms [i.e.

View Article and Find Full Text PDF

SARS-CoV-2 is a betacoronavirus virus responsible for the COVID-19 pandemic. Here, we determine the X-ray crystal structure of a potent neutralizing monoclonal antibody, CV30, isolated from a patient infected with SARS-CoV-2, in complex with the receptor binding domain. The structure reveals that CV30 binds to an epitope that overlaps with the human ACE2 receptor binding motif providing a structural basis for its neutralization.

View Article and Find Full Text PDF

Activating precursor B cell receptors of HIV-1 broadly neutralizing antibodies requires specifically designed immunogens. Here, we compared the abilities of three such germline-targeting immunogens against the VRC01-class receptors to activate the targeted B cells in transgenic mice expressing the germline VH of the VRC01 antibody but diverse mouse light chains. Immunogen-specific VRC01-like B cells were isolated at different time points after immunization, their VH and VL genes were sequenced, and the corresponding antibodies characterized.

View Article and Find Full Text PDF

Objectives: The object of this study was to examine if caesarean section delivered neonates have different middle ear function relative to neonates with vaginal delivery.

Methods: Auditory brainstem responses (ABRs) were examined in caesarean section delivered (n = 23) and vaginally delivered (n = 29) neonates. ABRs were also evoked with air- and bone-conducted stimuli (i.

View Article and Find Full Text PDF

The effect of presentation level and age on release from masking (RFM) was examined. Two speech-in-noise paradigms [i.e.

View Article and Find Full Text PDF

Objectives: The purpose of this study was to investigate the tympanometric asymmetry in children. The determination of ear differences would be useful clinically in determining what qualifies as a significant asymmetry in tympanometric indices and hence middle ear dysfunction.

Methods: Fifty-five otologically normal school-aged African American children participated.

View Article and Find Full Text PDF

SARS-CoV-2 is a betacoronavirus virus responsible for the COVID-19 pandemic. Here, we determined the X-ray crystal structure of a potent neutralizing monoclonal antibody, CV30, isolated from a patient infected with SARS-CoV-2, in complex with the receptor binding domain (RBD). The structure reveals CV30's epitope overlaps with the human ACE2 receptor binding site thus providing the structural basis for its neutralization by preventing ACE2 binding.

View Article and Find Full Text PDF

Antibody responses develop following SARS-CoV-2 infection, but little is known about their epitope specificities, clonality, binding affinities, epitopes, and neutralizing activity. We isolated B cells specific for the SARS-CoV-2 envelope glycoprotein spike (S) from a COVID-19-infected subject 21 days after the onset of clinical disease. 45 S-specific monoclonal antibodies were generated.

View Article and Find Full Text PDF

B cells specific for the SARS-CoV-2 S envelope glycoprotein spike were isolated from a COVID-19-infected subject using a stabilized spike-derived ectodomain (S2P) twenty-one days post-infection. Forty-four S2P-specific monoclonal antibodies were generated, three of which bound to the receptor binding domain (RBD). The antibodies were minimally mutated from germline and were derived from different B cell lineages.

View Article and Find Full Text PDF

A rare case of methamphetamine induced testicular ischemia, a 35-year-old man with clinical and sonographic features of left epididymitis. However, Ultrasound incidentally showed a lack of vascularity of the right testicle despite being asymptomatic on the right hemi-scrotum. He was a known intravenous methamphetamine user, admitting his last injection was 4 h prior to his presentation.

View Article and Find Full Text PDF

Background: This systematic review aims to study the effectiveness of 5-fluorouracil (5FU) in the reduction of tendon adhesions postsurgical repair.

Method: A systematic review was performed involving four databases, Cochrane, PubMed, MEDLINE, and Embase, looking for evidence of at least Level I or Level II (according to NHMRC) in the use of 5FU in tendon repairs in human or animal studies.

Results: Across the four databases 546 articles were identified.

View Article and Find Full Text PDF

Background: Although numerous studies have examined regional and racial-ethnic labeling of talker identity, few have evaluated speech perception skills of listeners from the southern United States.

Purpose: The objective of the study was to examine the effect of competition, signal-to-noise ratio (SNR), race, and sex on sentence recognition performance in talkers from the Southern American English dialect region.

Research Design: A four-factor mixed-measures design was used.

View Article and Find Full Text PDF