Publications by authors named "Andrea Sanchi"

Cells rapidly respond to replication stress actively slowing fork progression and inducing fork reversal. How replication fork plasticity is achieved in the context of nuclear organization is currently unknown. Using nuclear actin probes in living and fixed cells, we visualized nuclear actin filaments in unperturbed S phase and observed their rapid extension in number and length upon genotoxic treatments, frequently taking contact with replication factories.

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Stochastic origin activation gives rise to significant cell-to-cell variability in the pattern of genome replication. The molecular basis for heterogeneity in efficiency and timing of individual origins is a long-standing question. Here, we developed Methylation Accessibility of TArgeted Chromatin domain Sequencing (MATAC-Seq) to determine single-molecule chromatin accessibility of four specific genomic loci.

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Cells rapidly respond to replication stress actively slowing fork progression and inducing fork reversal. How replication fork plasticity is achieved in the context of nuclear organization is currently unknown. Using nuclear actin probes in living and fixed cells, we visualized nuclear actin filaments in unperturbed S phase, rapidly extending in number and thickness upon genotoxic treatments, and taking frequent contact with replication factories.

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The DNA-PKcs kinase mediates the repair of DNA double-strand breaks via classical non-homologous end joining (NHEJ). DNA-PKcs is also recruited to active replication forks, although a role for DNA-PKcs in the control of fork dynamics is unclear. Here, we identify a crucial role for DNA-PKcs in promoting fork reversal, a process that stabilizes stressed replication forks and protects genome integrity.

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The MDM2 oncoprotein antagonizes the tumor suppressor p53 by physical interaction and ubiquitination. However, it also sustains the progression of DNA replication forks, even in the absence of functional p53. Here, we show that MDM2 binds, inhibits, ubiquitinates, and destabilizes poly(ADP-ribose) polymerase 1 (PARP1).

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ADP-ribosylation is a modification that targets a variety of macromolecules and regulates a diverse array of important cellular processes. ADP-ribosylation is catalysed by ADP-ribosyltransferases and reversed by ADP-ribosylhydrolases. Recently, an ADP-ribosyltransferase toxin termed 'DarT' from bacteria, which is distantly related to human PARPs, was shown to modify thymidine in single-stranded DNA in a sequence specific manner.

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Article Synopsis
  • The study focuses on frequently mutated splicing factor genes in myelodysplastic syndromes (MDS) and their impact on gene splicing in bone marrow cells.
  • Researchers used RNA sequencing to identify aberrantly spliced genes and disrupted pathways in patients, revealing common mechanisms affecting RNA splicing, protein synthesis, and mitochondrial function.
  • The findings link specific splicing alterations to clinical outcomes, suggesting that targeting certain dysregulated pathways could improve understanding and treatment of MDS.
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Article Synopsis
  • Mutations in splicing factor genes (like SF3B1, SRSF2, U2AF1, and ZRSR2) are common in myelodysplastic syndromes (MDS), indicating that improper spliceosome function may contribute to the disease.
  • These mutations lead to abnormal splicing of various genes, which are being studied for their role in MDS development and progression.
  • Research is focused on developing therapies that target these splicing dysfunctions, with splicing inhibitors showing promise in treating patients with mutations in these splicing factor genes.
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