Publications by authors named "Anass Chiki"

Article Synopsis
  • Protein post-translational modifications (PTMs) are essential for various biological processes and can be used as biomarkers for diseases, but current measurement techniques are limited.
  • Nanopore sensing, particularly using aerolysin, shows promise for high-sensitivity detection of low-abundance proteins and their PTMs, like those from α-synuclein.
  • This research demonstrates the effective use of deep learning to identify and quantify α-synuclein peptides with different PTMs, advancing the prospects for biomarker discovery and diagnostics.
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Article Synopsis
  • Antibodies that target a specific part of a protein called phosphorylated alpha-synuclein (pS129) are important for studying diseases like Parkinson's.
  • Researchers found that different changes to this protein can affect how well these antibodies work in detecting it in the brain and other tissues.
  • The study also highlighted that not all antibodies are accurate and that better, more reliable antibodies need to be developed to improve research and diagnosis of these diseases.
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The lack of detailed insight into the structure of aggregates formed by the huntingtin protein (HTT) has hampered the efforts to develop therapeutics and diagnostics targeting pathology formation in the brain of patients with Huntington's disease. To address this knowledge gap, we investigated the structural properties of in vitro-generated fibrils from exon1 of the huntingtin protein by cryogenic electron microscopy and single-particle analyses. We show that wildtype and mutant exon1 of the huntingtin protein form nonhelical fibrils with a polyglutamine amyloid core composed of β-hairpins with unique characteristics that have not been previously observed with other amyloid filaments.

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Huntington's disease (HD) is caused by a CAG trinucleotide repeat expansion in the first exon of the huntingtin (HTT) gene coding for the huntingtin (HTT) protein. The misfolding and consequential aggregation of CAG-expanded mutant HTT (mHTT) underpin HD pathology. Our interest in the life cycle of HTT led us to consider the development of high-affinity small-molecule binders of HTT oligomerized/amyloid-containing species that could serve as either cellular and in vivo imaging tools or potential therapeutic agents.

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Article Synopsis
  • The N-terminal domain (Nt17) of the Huntingtin protein is crucial for regulating its aggregation and toxicity, particularly in relation to the length of the polyQ repeat.
  • Removing or altering Nt17 affects Httex1's aggregation, reduces cell inclusions, enhances neuronal uptake, and can prevent cell death in models of Huntington's disease.
  • The findings suggest that Nt17 is a central regulator in the behavior of Httex1, making it a potential target for therapies aimed at reducing Huntingtin-related neurotoxicity.
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Post-translational modifications (PTMs) within the first 17 amino acids (Nt17) of the Huntingtin protein (Htt) have been shown to inhibit the aggregation and attenuate the toxicity of mutant Htt proteins and in various models of Huntington's disease. Here, we expand on these studies by investigating the effect of methionine eight oxidation (oxM8) and its crosstalk with lysine 6 acetylation (AcK6) or threonine 3 phosphorylation (pT3) on the aggregation of mutant Httex1 (mHttex1). We show that M8 oxidation delays but does not inhibit the aggregation and has no effect on the final morphologies of mHttex1aggregates.

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Post-translational modifications (PTMs) within the first 17 amino acids (Nt17) of exon 1 of the Huntingtin protein (Httex1) play important roles in modulating its cellular properties and functions in health and disease. In particular, phosphorylation of threonine and serine residues (T3, S13, and/or S16) has been shown to inhibit Htt aggregation in vitro and inclusion formation in cellular and animal models of Huntington's disease (HD). In this paper, we describe a new and simple methodology for producing milligram quantities of highly pure wild-type or mutant Httex1 proteins that are site-specifically phosphorylated at T3 or at both S13 and S16.

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Article Synopsis
  • * Research identified a kinase called TANK-binding kinase 1 (TBK1) that effectively phosphorylates HTT, leading to reduced aggregation and toxicity of mutant HTT in various models.
  • * Enhancing TBK1 can potentially serve as a therapeutic approach for HD by lowering mutant HTT levels and preventing its harmful aggregation.
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As an intrinsically disordered protein, monomeric alpha-synuclein (aSyn) occupies a large conformational space. Certain conformations lead to aggregation prone and non-aggregation prone intermediates, but identifying these within the dynamic ensemble of monomeric conformations is difficult. Herein, we used the biologically relevant calcium ion to investigate the conformation of monomeric aSyn in relation to its aggregation propensity.

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The microtubule-associated protein Tau is implicated in the pathogenesis of several neurodegenerative disorders, including Alzheimer's disease. Increasing evidence suggests that post-translational modifications play critical roles in regulating Tau's normal functions and its pathogenic properties in tauopathies. Very little is known about how phosphorylation of tyrosine residues influences the structure, aggregation, and microtubule- and lipid-binding properties of Tau.

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Article Synopsis
  • Increasing evidence indicates that amyloid polymorphism leads to various strains of amyloids with different toxicities and pathologies, but validating this is difficult due to the lack of effective diagnostic tools.
  • Researchers developed gold nanoparticles coated with 11-mercapto-1-undecanesulfonate that can effectively label amyloid fibrils from synthetic, recombinant, and native sources.
  • The use of these nanoparticles with cryogenic transmission electron microscopy reveals unique morphological features of amyloid fibrils, highlighting significant differences in fibril structure from human tissue compared to in vitro models, and supports the idea that the biological environment affects amyloid strain characteristics.
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Increasing evidence suggests that the process of alpha-synuclein (α-syn) aggregation from monomers into amyloid fibrils and Lewy bodies, via oligomeric intermediates plays an essential role in the pathogenesis of different synucleinopathies, including Parkinson's disease (PD), multiple system atrophy and dementia with Lewy bodies (DLB). However, the nature of the toxic species and the mechanisms by which they contribute to neurotoxicity and disease progression remain elusive. Over the past two decades, significant efforts and resources have been invested in studies aimed at identifying and targeting toxic species along the pathway of α-syn fibrillization.

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Debilitating, yet underinvestigated nonmotor symptoms related to mood/emotion, such as depression, are common in Parkinson's disease. Here, we explore the role of depression and of the amygdala, a brain region robustly linked to mood/emotion, in synucleinopathy. We hypothesized that mood/emotional deficits might accelerate Parkinson's disease-linked symptomatology, including the formation of α-synuclein pathology.

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Article Synopsis
  • Huntington's disease is caused by a genetic mutation leading to the toxic accumulation of the Huntingtin protein, and phosphorylation of this protein is crucial for its behavior and effects in cells.
  • Phosphorylation at specific residues (Ser-13 and Ser-16) has significant effects on reducing the aggregation of mutant protein, while also disrupting critical structural features, unlike phosphomimetic substitutions which do not fully replicate these effects.
  • Understanding these phosphorylation processes sheds light on the potential for targeting the enzymes involved as therapeutic strategies for managing Huntington's disease.
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Huntington's Disease (HD) is an inherited fatal neurodegenerative disease caused by a CAG expansion (≥36) in the first exon of the HD gene, resulting in the expression of the Huntingtin protein (Htt) or N-terminal fragments thereof with an expanded polyglutamine (polyQ) stretch. The exon1 of the Huntingtin protein (Httex1) is the smallest Htt fragment that recapitulates many of the features of HD in cellular and animal models and is one of the most widely studied fragments of Htt. The small size of Httex1 makes it experimentally more amenable to biophysical characterization using standard and high-resolution techniques in comparison to longer fragments or full-length Htt.

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Intracellular deposits of α-synuclein in the form of Lewy bodies are major hallmarks of Parkinson's disease (PD) and a range of related neurodegenerative disorders. Post-translational modifications (PTMs) of α-synuclein are increasingly thought to be major modulators of its structure, function, degradation and toxicity. Among these PTMs, phosphorylation near the C-terminus at S129 has emerged as a dominant pathogenic modification as it is consistently observed to occur within the brain and cerebrospinal fluid (CSF) of post-mortem PD patients, and its level appears to correlate with disease progression.

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Posttranslational modifications can have profound effects on the biological and biophysical properties of proteins associated with misfolding and aggregation. However, their detection and quantification in clinical samples and an understanding of the mechanisms underlying the pathological properties of misfolding- and aggregation-prone proteins remain a challenge for diagnostics and therapeutics development. We have applied an ultrasensitive immunoassay platform to develop and validate a quantitative assay for detecting a posttranslational modification (phosphorylation at residue T3) of a protein associated with polyglutamine repeat expansion, namely Huntingtin, and characterized its presence in a variety of preclinical and clinical samples.

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Article Synopsis
  • We used protein semisynthesis to explore how lysine acetylation and phosphorylation affect the structure and aggregation of mutant huntingtin exon 1 (Httex1) for the first time.
  • Our findings reveal that phosphorylation at T3 stabilizes the α-helical structure of the first 17 amino acids (Nt17) and helps prevent aggregation of Httex1, while acetylation alone does not affect aggregation.
  • Notably, acetylation at K6 can reverse the aggregation-inhibiting effect of T3 phosphorylation, indicating that different post-translational modifications (PTMs) can interact to regulate the behavior and function of Httex1.
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Parkinson's disease (PD) is characterized by the loss of dopaminergic neurons in the substantia nigra and the presence of intraneuronal inclusions consisting of aggregated and post-translationally modified α-synuclein (α-syn). Despite advances in the chemical synthesis of α-syn and other proteins, the generation of site-specifically nitrated synthetic proteins has not been reported. Consequently, it has not been possible to determine the roles of nitration at specific residues in regulating the physiological and pathogenic properties of α-syn.

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