Publications by authors named "Ananya Ray-Soni"

Hexanucleotide GC repeat expansions in the gene are the most common genetic cause of amyotrophic lateral sclerosis and frontotemporal dementia. Dipeptide repeat proteins (DPRs) generated by translation of repeat-containing RNAs show toxic effects in vivo as well as in vitro and are key targets for therapeutic intervention. We generated human antibodies that bind DPRs with high affinity and specificity.

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In bacteria, disassembly of elongating transcription complexes (ECs) can occur at intrinsic terminators in a 2- to 3-nucleotide window after transcription of multiple kilobase pairs of DNA. Intrinsic terminators trigger pausing on weak RNA-DNA hybrids followed by formation of a strong, GC-rich stem-loop in the RNA exit channel of RNA polymerase (RNAP), inactivating nucleotide addition and inducing dissociation of RNA and RNAP from DNA. Although the movements of RNA and DNA during intrinsic termination have been studied extensively leading to multiple models, the effects of RNAP conformational changes remain less well defined.

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Article Synopsis
  • Intrinsic termination in bacteria occurs when RNA forms a hairpin near a weak RNA-DNA hybrid in RNA polymerase, leading to disassembly of the transcription complex after RNA synthesis.
  • The role of the polymorphous trigger loop (TL) in RNA polymerase is crucial, as it may promote termination by changing conformations and interacting with the hairpin structure.
  • Experimental findings indicate that while the TL aids in termination, stabilizing its conformation can slow down the termination rate; instead, fluctuations in TL conformations enhance the diversity of the transcription complex needed for effective termination pathways.
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Transcript termination is essential for accurate gene expression and the removal of RNA polymerase (RNAP) at the ends of transcription units. In bacteria, two mechanisms are responsible for proper transcript termination: intrinsic termination and Rho-dependent termination. Intrinsic termination is mediated by signals directly encoded within the DNA template and nascent RNA, whereas Rho-dependent termination relies upon the adenosine triphosphate-dependent RNA translocase Rho, which binds nascent RNA and dissociates the elongation complex.

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