Publications by authors named "Amir Masoudi"

We study percolation on the sites of a finite lattice visited by a generalized random walk of finite length with periodic boundary conditions. More precisely, consider Levy flights and walks with finite jumps of length >1 [like Knight's move random walks (RWs) in two dimensions and generalized Knight's move RWs in 3D]. In these walks, the visited sites do not form (as in ordinary RWs) a single connected cluster, and thus percolation on them is nontrivial.

View Article and Find Full Text PDF

Molecular self-assembly is a ubiquitous phenomenon in which individual atoms or molecules set up an ordered structure. It is of high interest for understanding the biology and a variety of diseases at the molecular level. In this work, we studied the self-assembly of tyrosine molecules extensive molecular dynamics simulations.

View Article and Find Full Text PDF

It is well known that all biological systems which undergo oxidative metabolism or oxidative stress generate a small amount of light. Since the origin of excited states producing this light is generally accepted to come from chemical reactions, the term endogenous biological chemiluminescence is appropriate. Apart from biomedicine, this phenomenon has potential applications also in plant biology and agriculture like monitoring the germination rate of seeds.

View Article and Find Full Text PDF

Casimir forces between material surfaces at close proximity of less than 200 nm can lead to increased chaotic behavior of actuating devices depending on the strength of the Casimir interaction. We investigate these phenomena for phase-change materials in torsional oscillators, where the amorphous to crystalline phase transitions lead to transitions between high and low Casimir force and torque states, respectively, without material compositions. For a conservative system bifurcation curve and Poincare maps analysis show the absence of chaotic behavior but with the crystalline phase (high force-torque state) favoring more unstable behavior and stiction.

View Article and Find Full Text PDF
Article Synopsis
  • Pathogenic bacteria use Trimeric Autotransporter Adhesins (TAAs) to adhere to host cells, which consist of a membrane anchoring domain and a passenger domain that helps with binding.* -
  • Researchers solved the crystal structure of the BpaA TAA head domain from Burkholderia pseudomallei, revealing a unique trimer structure made of both familiar and novel elements.* -
  • The findings about BpaA's modular structure offer insights into how pathogens evolve their adhesion mechanisms, which could lead to advancements in diagnostic techniques.*
View Article and Find Full Text PDF