Publications by authors named "Amer A Hossain"

Bacteria have adapted to phage predation by evolving a vast assortment of defence systems. Although anti-phage immunity genes can be identified using bioinformatic tools, the discovery of novel systems is restricted to the available prokaryotic sequence data. Here, to overcome this limitation, we infected Escherichia coli carrying a soil metagenomic DNA library with the lytic coliphage T4 to isolate clones carrying protective genes.

View Article and Find Full Text PDF

Hoffmann et al. (2022) demonstrate that RNA-guided transposons are remarkably sequence specific due to the action of a AAA+ ATPase, TnsC, that recruits the transposase to the correct target site.

View Article and Find Full Text PDF
Article Synopsis
  • CRISPR-Cas systems help bacteria defend against viruses by using RNA guides to target and cut viral DNA.
  • Bacteriophages, like λ, have their own recombination systems, specifically the Red system, which can help them evade CRISPR by mutating their target sequences.
  • This Red system outperforms bacterial repair mechanisms, allowing phages to produce more variations that can resist CRISPR targeting, potentially aiding their spread among viruses.
View Article and Find Full Text PDF

Focal cortical dysplasia (FCD) and hemimegalencephaly (HME) are epileptogenic neurodevelopmental malformations caused by mutations in mTOR pathway genes. Deep sequencing of these genes in FCD/HME brain tissue identified an etiology in 27 of 66 cases (41%). Radiographically indistinguishable lesions are caused by somatic activating mutations in AKT3, MTOR, and PIK3CA and germline loss-of-function mutations in DEPDC5, NPRL2, and TSC1/2, including TSC2 mutations in isolated HME demonstrating a "two-hit" model.

View Article and Find Full Text PDF

Comparative analyses have identified genomic regions potentially involved in human evolution but do not directly assess function. Human accelerated regions (HARs) represent conserved genomic loci with elevated divergence in humans. If some HARs regulate human-specific social and behavioral traits, then mutations would likely impact cognitive and social disorders.

View Article and Find Full Text PDF