Publications by authors named "Almeida B"

Lateritic soils, particularly abundant in tropical regions, have been successfully used in the construction of unbound layers of flexible pavements in Brazil since the 1970s. Despite their potential, these soils are often discarded or only recommended after stabilization processes, based on traditional parameters such as gradation requirements and Atterberg limits. This study investigates the mechanical characteristics of a lateritic soil from Roraima, focusing on its resilient modulus and permanent deformation properties, assessed through repeated load triaxial tests.

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Laser ablation was used to successfully fabricate multiferroic bilayer thin films, composed of BaTiO (BTO) and CoFeO (CFO), on highly doped (100) Si substrates. This study investigates the influence of BaTiO layer thickness (50-220 nm) on the films' structural, magnetic, and dielectric properties. The dense, polycrystalline films exhibited a tetragonal BaTiO phase and a cubic spinel CoFeO layer.

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The present study investigates VKINE, a bioactive proteolytic fragment of the proteoglycan VCAN, as a novel and significant element in the tumor extracellular matrix (ECM). Although VKINE has been recognized for its immunomodulatory potential in certain tumor types, its impact on ECM degradation and prognostic implications remains poorly understood. : This study aimed to evaluate VCAN proteolysis and its association with ADAMTS enzymes involved in extracellular matrix remodeling in spontaneous canine mammary gland cancer.

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The Centre for Data and Knowledge Integration for Health's (CIDACS) data governance efforts have primarily focused on legal, technical and operational procedures to provide high-quality linked administrative data for investigations on social determinants of health and the impact of social protection policies in low-income and vulnerable populations throughout Brazil. The Centre is moving towards an updated data governance model that incorporates the participation of, and consultation and dialogue with, data stakeholders, including groups covered by our linked data. To this end, this paper presents our procedures and challenges, outlining relevant considerations based on a focused literature review that aims to support the inclusion of societal participation in our revised data governance approach, which should be considered an ongoing process.

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The prediction of molecular phenotypes from DNA sequences remains a longstanding challenge in genomics, often driven by limited annotated data and the inability to transfer learnings between tasks. Here, we present an extensive study of foundation models pre-trained on DNA sequences, named Nucleotide Transformer, ranging from 50 million up to 2.5 billion parameters and integrating information from 3,202 human genomes and 850 genomes from diverse species.

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Background: Cancer patients face a greater risk of complications and death after contracting the SARS-CoV-2 virus. Booster doses of the COVID-19 vaccine were suggested to provide additional protection. This study aimed to assess how cancer patients' immune systems respond to the booster shots and categorize their responses.

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Objectives: LTF SNP rs1126478 (T>C) could modulate Lactoferrin function and release and has been associated with periodontal disease in different locations before, but not in America. Thus, this study aimed to assess the association between this SNP and Grade C Periodontitis (Generalized (PerioC-G) and Molar Incisor Pattern (PerioC-MIP)) and seek a relationship between its presence and LTF gingival crevicular fluid (GCF) production.

Material And Methods: Oral cells from 361 Brazilians and 375 North Americans patients (Diseased and Health Controls (PH) from both locations) were collected.

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Globally, land use change has consistently resulted in greater losses than gains in aboveground biomass (AGB). Forest fragmentation is a primary driver of biodiversity loss and the depletion of natural capital. Measuring landscape characteristics and analyzing changes in forest landscape patterns are essential for accounting for the contributions of forest ecosystems to the economy and human well-being.

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Novel photocatalysts were synthesized through the association of carbon quantum dots (CQDs) with commercial (P25) titanium dioxide (TiO) by sonication. The resulting TiO/CQDs composite was then incorporated into the polyamide 66 (PA66) biopolymer nanofibers using the electrospinning technique, considering a composite nanoparticles-to-polymer ratio of 1:2 in the electrospinning precursor solution. The produced nanofibers presented suitable morphology and were tested for the photocatalytic degradation under simulated solar radiation of 10 mg L of amoxicillin (AMX) and sulfadiazine (SDZ), in phosphate buffer solution (pH 8.

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This study analyzed a recently developed bone substitute biomaterial made of chitosan-xanthanhydroxyapatite-graphene oxide (CXHAG). The CXHAG particles underwent in vitro structural and morphological characterization, and in vivo testing with or without osteogenic conditioned medium from mesenchymal stem cells. Aim: The aim of this study was to determine whether the CXHAG novel biomaterial, supplemented with conditioned medium from mesenchymal stem cells, could be useful for bone regeneration.

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Background: Invasive candidiasis (IC) represents a significant threat to both mortality and morbidity, especially among vulnerable populations. Intra-abdominal candidiasis (IAC) frequently occurs in critically ill and cancer patients, with these specific groups carrying a heightened risk for such invasive fungal infections. Despite this, there is a noticeable lack of attention to IAC in cancer patients within the literature, highlighting a critical gap that requires urgent consideration.

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The milky spots are structures found in the omentum of humans and other vertebrates, representing a fraction of the lymphomyeloid tissue associated with the celom. They majorly consist of B lymphocytes, T lymphocytes, and macrophages. Also found in smaller quantities are mesothelial, stromal, dendritic, and rare mast cells.

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Background: Childhood cancer survivors (CCS) have a 50% higher risk of diabetes mellitus (DM) compared with the general population. Interventions in survivors with prediabetes (fasting glucose 100-125 mg/dL or hemoglobin A1c 5.7%-6.

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Genomic enhancers are key transcriptional regulators which, upon the binding of sequence-specific transcription factors, activate their cognate target promoters. Although enhancers have been extensively studied in isolation, a substantial number of genes have more than one simultaneously active enhancer, and it remains unclear how these cooperate to regulate transcription. Using Drosophila melanogaster S2 cells as a model, we assay the activities of more than a thousand individual enhancers and about a million enhancer pairs toward housekeeping and developmental core promoters with STARR-seq.

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Article Synopsis
  • The study develops a new method to identify genetic variants that increase breast cancer risk by focusing on variants in gene regulatory regions, using genome-wide association studies (GWAS) as a basis.
  • Through analysis of microarray data from normal breast tissue, the researchers identified over 54,000 differential allelic expression QTLs (daeQTLs) linked to breast cancer risk, mapping these to relevant genes and loci.
  • The findings highlight the connection between risk-related genetic variants and gene expression regulation, identifying candidate causal variants at the 5q14.1 locus that may influence breast cancer risk through alternative transcription mechanisms.
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  • Complex Regional Pain Syndrome (CRPS) involves symptoms like pain, swelling, and movement issues, and this study investigates the effectiveness of botulinum toxin type A (BoNT-A) as a treatment.
  • The research followed PRISMA guidelines and included three randomized controlled trials with 64 patients, comparing BoNT-A to a placebo, focusing on pain relief outcomes.
  • Results indicate BoNT-A may help reduce CRPS pain, especially when combined with lumbar sympathetic blockade, but more extensive studies are needed to confirm its safety and efficacy, particularly for local application methods which still require further examination.
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Viral neurologic diseases are common in cattle, although most non-suppurative meningoencephalitis (NSM) remains etiologically unknown. We compared the epidemiological, clinical, and pathological data among 79 cases of rabies, 12 cases of NSM of unknown etiology (NSM-UE), and 8 cases of herpetic meningoencephalitis previously diagnosed in cattle in Southern Brazil. Neurological clinical signs were similar among rabies and NSM-UE and different in cattle with herpetic meningoencephalitis.

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Small open reading frames (smORFs) shorter than 100 codons are widespread and perform essential roles in microorganisms, where they encode proteins active in several cell functions, including signal pathways, stress response, and antibacterial activities. However, the ecology, distribution and role of small proteins in the global microbiome remain unknown. Here, we construct a global microbial smORFs catalog (GMSC) derived from 63,410 publicly available metagenomes across 75 distinct habitats and 87,920 high-quality isolate genomes.

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Motivation: Large language models, trained on enormous corpora of biological sequences, are state-of-the-art for downstream genomic and proteomic tasks. Since the genome contains the information to encode all proteins, genomic language models (gLMs) hold the potential to make downstream predictions not only about DNA sequences, but also about proteins. However, the performance of gLMs on protein tasks remains unknown, due to few tasks pairing proteins with the coding DNA sequences (CDS) that can be processed by gLMs.

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Cancer patients, prone to severe COVID-19, face immune challenges due to their disease and treatments. Identifying biomarkers, particularly extracellular vesicle (EV)-derived microRNAs (miRNAs), is vital for comprehending their response to COVID-19 vaccination. Therefore, this study aimed to investigate specific EV-miRNAs in the plasma of cancer patients under active treatment who received the COVID-19 booster vaccine.

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Hydrogels are water-swollen polymeric matrices with properties that are remarkably similar in function to the extracellular matrix. For example, the polymer matrix provides structural support and adhesion sites for cells in much of the same way as the fibers of the extracellular matrix. In addition, depending on the polymer used, bioactive sites on the polymer may provide signals to initiate certain cell behavior.

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Snakes of the genus Bothrops inhabit tropical forests in Central and South America and are important for the biomedical and pharmaceutical industries because of the chemical properties of their venom. They serve as either definitive or intermediate hosts for many parasitic helminths. The Marajó Island (Brazil) is the natural habitat of venomous snakes, Bothrops atrox and Bothrops marajoensis, which are often found around rural and peri-urban areas and are known to bite humans.

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Article Synopsis
  • * AgroNT is a new large language model specifically designed to predict regulatory annotations and gene expression in plants, particularly focused on crops, achieving top-tier results in these predictions.
  • * The model's analysis on cassava includes evaluating the effects of over 10 million mutations, and the compiled data is introduced as the Plants Genomic Benchmark (PGB) to enhance deep learning approaches in genomic studies, with AgroNT available for public use on HuggingFace.
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  • The study investigates the role of the EZR gene and its protein ezrin in various cancers, particularly focusing on cervical squamous cell carcinoma and stomach adenocarcinoma, and explores the potential of the ezrin inhibitor NSC305787 as a cancer treatment.
  • Using data from The Cancer Genome Atlas (TCGA), researchers found that high levels of EZR mRNA are linked to negative clinical outcomes and key biological processes in targeted cancers.
  • Results show that treating cancer cell lines with NSC305787 significantly decreases cell viability and growth, causing cell death and DNA damage while altering gene expression related to survival and apoptosis, suggesting ezrin as a potential therapeutic target.
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