Publications by authors named "Alisia Fadini"

We present millisecond quantitative serial X-ray crystallography at 1.7 Å resolution demonstrating precise optical control of reversible population transfer from Trans-Cis and Cis-Trans photoisomerization of a reversibly switchable fluorescent protein, rsKiiro. Quantitative results from the analysis of electron density differences, extrapolated structure factors, and occupancy refinements are shown to correspond to optical measurements of photoinduced population transfer and have sensitivity to a few percent in concentration differences.

View Article and Find Full Text PDF
Article Synopsis
  • X-ray Free Electron Lasers (XFELs) enhance crystallography by enabling high-quality data collection at unprecedented speeds, particularly with the upcoming megahertz superconducting FELs.
  • Traditional gas dynamic virtual nozzles (GDVNs) are limited due to high sample consumption, making them impractical for some protein studies while a new droplet-on-demand injection method shows promise with significantly lower consumption.
  • The study achieved a collection rate of 150,000 indexed patterns per hour at the European XFEL, yielding impressive lysozyme crystallography data at 1.38 Å resolution, marking a significant advancement in protein structure analysis.
View Article and Find Full Text PDF

Photolyase is an enzyme that uses light to catalyze DNA repair. To capture the reaction intermediates involved in the enzyme's catalytic cycle, we conducted a time-resolved crystallography experiment. We found that photolyase traps the excited state of the active cofactor, flavin adenine dinucleotide (FAD), in a highly bent geometry.

View Article and Find Full Text PDF

The photoisomerization reaction of a fluorescent protein chromophore occurs on the ultrafast timescale. The structural dynamics that result from femtosecond optical excitation have contributions from vibrational and electronic processes and from reaction dynamics that involve the crossing through a conical intersection. The creation and progression of the ultrafast structural dynamics strongly depends on optical and molecular parameters.

View Article and Find Full Text PDF

Chromophore photoisomerization is a fundamental process in chemistry and in the activation of many photosensitive proteins. A major task is understanding the effect of the protein environment on the efficiency and direction of this reaction compared to what is observed in the gas and solution phases. In this study, we set out to visualize the hula twist (HT) mechanism in a fluorescent protein, which is hypothesized to be the preferred mechanism in a spatially constrained binding pocket.

View Article and Find Full Text PDF

Orange Carotenoid protein (OCP) is the only known photoreceptor which uses carotenoid for its activation. It is found exclusively in cyanobacteria, where it functions to control light-harvesting of the photosynthetic machinery. However, the photochemical reactions and structural dynamics of this unique photosensing process are not yet resolved.

View Article and Find Full Text PDF