A User's Guide to Metaphors In Ecology and Evolution.

Biologists energetically debate terminology in ecology and evolution, but rarely discuss general strategies for resolving these debates. We suggest focusing on metaphors, arguing that, rather than looking down on metaphors, biologists should embrace these terms as the powerful tools they are. Like any powerful tool, metaphors need to be used mindful of their limitations.

HOW TO STUDY ADAPTATION (AND WHY TO DO IT THAT WAY).

Some adaptationist explanations are regarded as maximally solid and others fanciful just-so stories. Just-so stories are explanations based on very little evidence. Lack of evidence leads to circular-sounding reasoning: "this trait was shaped by selection in unseen ancestral populations and this selection must have occurred because the trait is present.

Objects and processes: Two notions for understanding biological information.

In spite of being ubiquitous in life sciences, the concept of information is harshly criticized. Uses of the concept other than those derived from Shannon׳s theory are denounced as metaphoric. We perform a computational experiment to explore whether Shannon׳s information is adequate to describe the uses of said concept in commonplace scientific practice.

Thinking in continua: beyond the "adaptive radiation" metaphor.

"Adaptive radiation" is an evocative metaphor for explosive evolutionary divergence, which for over 100 years has given a powerful heuristic to countless scientists working on all types of organisms at all phylogenetic levels. However, success has come at the price of making "adaptive radiation" so vague that it can no longer reflect the detailed results yielded by powerful new phylogeny-based techniques that quantify continuous adaptive radiation variables such as speciation rate, phylogenetic tree shape, and morphological diversity. Attempts to shoehorn the results of these techniques into categorical "adaptive radiation: yes/no" schemes lead to reification, in which arbitrary quantitative thresholds are regarded as real.