Publications by authors named "Alexis S Kokaras"

Article Synopsis
  • - The study compares two methods for analyzing oral microbial communities: a probe-matching approach called HOMI and a tree-based approach using QIIME, focusing on their effectiveness in classifying microbial communities.
  • - Both techniques were applied to analyze samples from ten mock communities and 119 real supragingival plaque samples from different patient groups.
  • - The results showed that HOMI and QIIME produced similar community compositions and diversity profiles, particularly highlighting differences in microbial communities between patients with primary Sjögren's Syndrome and healthy subjects.
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Introduction: This study was conducted to evaluate the microbiomes of endodontic-periodontal lesions before and after chemomechanical preparation (CMP).

Methods: Clinical samples were taken from 15 root canals (RCs) with necrotic pulp tissues and from their associated periodontal pockets (PPs) (n = 15) of teeth with endodontic-periodontal lesions before and after CMP. The Human Oral Microbe Identification using Next Generation Sequencing (NGS) protocol and viable culture were used to analyze samples from RCs and PPs.

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Limited information is available about the effects of HIV and subsequent antiretroviral treatment on host-microbe interactions. This study aimed to determine the salivary microbial composition for 10 HIV-seropositive subjects, before and 6 months after highly active antiretroviral therapy (HAART), compared with that for 10 HIV-seronegative subjects. A conventional culture and two culture-independent analyses were used and consistently demonstrated differences in microbial composition among the three sets of samples.

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Background: Oral pathology is a commonly reported extraintestinal manifestation of Crohn's disease (CD). The host-microbe interaction has been implicated in the pathogenesis of inflammatory bowel disease (IBD) in genetically susceptible hosts, yet limited information exists about oral microbes in IBD. We hypothesize that the microbiology of the oral cavity may differ in patients with IBD.

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