Publications by authors named "Alexis Rapin"

Article Synopsis
  • Inflammatory gut disorders like inflammatory bowel disease (IBD) are influenced by dietary, environmental, and genetic factors, and the understanding of how these factors interact is still incomplete.
  • Research on 52 BXD mouse strains highlighted that a high-fat diet (HFD) can lead to an IBD-like transcriptome, showing that both genetics and diet play a role in intestinal inflammation.
  • Through gene co-expression analyses, the study identified key regulatory modules linked to IBD and pinpointed two candidate genes that may influence IBD susceptibility in humans, enhancing our understanding of genetic and dietary contributions to the disease.
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Background & Aims: Non-alcoholic fatty liver disease (NAFLD) and steatohepatitis (NASH) have become the world's most common liver diseases, placing a growing strain on healthcare systems worldwide. Nonetheless, no effective pharmacological treatment has been approved. The naturally occurring compound cyclo histidine-proline (His-Pro) (CHP) is an interesting candidate for NAFLD management, given its safety profile and anti-inflammatory effects.

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Background: Early-life microbial colonization of the skin may modulate the immune system and impact the development of atopic dermatitis (AD) and allergic diseases later in life. To address this question, we assessed the association between the skin microbiome and AD, skin barrier integrity and allergic diseases in the first year of life. We further explored the evolution of the skin microbiome with age and its possible determinants, including delivery mode.

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Mitohormesis defines the increase in fitness mediated by adaptive responses to mild mitochondrial stress. Tetracyclines inhibit not only bacterial but also mitochondrial translation, thus imposing a low level of mitochondrial stress on eukaryotic cells. We demonstrate in cell and germ-free mouse models that tetracyclines induce a mild adaptive mitochondrial stress response (MSR), involving both the ATF4-mediated integrative stress response and type I interferon (IFN) signaling.

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The mechanisms maintaining adult lymphatic vascular specialization throughout life and their role in coordinating inter-organ communication to sustain homeostasis remain elusive. We report that inactivation of the mechanosensitive transcription factor in adult lymphatic endothelium leads to a stepwise intestine-to-lung systemic failure. loss compromised the gut epithelial barrier, promoted dysbiosis and bacterial translocation to peripheral lymph nodes, and increased circulating levels of purine metabolites and angiopoietin-2.

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Article Synopsis
  • Evidence suggests that the lower airway microbiota plays a crucial role in lung health, particularly in lung transplant recipients.
  • Researchers analyzed 234 bronchoalveolar lavage samples and identified four distinct "pneumotypes" which reflect different states of lung microbiota composition post-transplant.
  • The 'balanced' pneumotype is associated with better immune tolerance and lung function, while other pneumotypes linked to potential pathogens are correlated with increased immune response and risks of complications.
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Background: Allergic skin inflammation often presents in early childhood; however, little is known about the events leading to its initiation and whether it is transient or long-term in nature.

Objective: We sought to determine the immunologic rules that govern skin inflammation in early life.

Methods: Neonatal and adult mice were epicutaneously sensitized with allergen followed by airway allergen challenge.

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Increasing evidence suggests that intestinal helminth infection can alter intestinal microbial communities with important impacts on the mammalian host. However, all of the studies to date utilize different techniques to study the microbiome and access different sites of the intestine with little consistency noted between studies. In the present study, we set out to perform a comprehensive analysis of the impact of intestinal helminth infection on the mammalian intestinal bacterial microbiome.

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Intestinal helminths, along with mutualistic microbes, have cohabited the intestine of mammals throughout evolution. Interactions between helminths, bacteria, and their mammalian hosts may shape not only host-helminth and host-microbiome interactions, but also the relationship between helminths and the microbiome. This 'ménage à trois' situation may not be completely balanced in that it may favor either the host or the parasite, possibly at the cost of the other partner.

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The microbiota have been shown to play an important role in diverse biological processes including immunity, metabolism, and digestion. Assessing the exact composition of the microbiota has proven challenging due to the often unknown growth specificities of its members, and culture-based approaches typically fail to capture the complete diversity of microorganisms present. Next Generation Sequencing (NGS) methods provide an efficient means to gather information about cultured and uncultured members of the microbiota.

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Article Synopsis
  • The study focuses on creating a small-scale bioreactor to dynamically observe and understand the behavior of red blood cells (RBCs) under different conditions, particularly in transfusion settings.
  • The design features a fluidized bed setup that holds a large number of RBCs and mimics storage conditions for studying ex vivo aging in both aerobic and anaerobic environments over 14 days.
  • Findings indicate that RBC aging leads to increases in hemolysis and microvesiculation, with reduced impacts under anaerobic conditions, and provide insights into metabolic changes, revealing trends in glucose consumption and lactate production.
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Intestinal helminths are potent regulators of their host's immune system and can ameliorate inflammatory diseases such as allergic asthma. In the present study we have assessed whether this anti-inflammatory activity was purely intrinsic to helminths, or whether it also involved crosstalk with the local microbiota. We report that chronic infection with the murine helminth Heligmosomoides polygyrus bakeri (Hpb) altered the intestinal habitat, allowing increased short chain fatty acid (SCFA) production.

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