Publications by authors named "Alexander Perov"

Attitude determination systems based on Global Navigation Satellite Systems (GNSS) work on principle of phase interferometer, using multiple receiving antennas. They rely on a good quality of carrier phase tracking, that is not the case in real dynamic environment with low signal-to-noise ratio (SNR), for example, in a ground vehicle moving through an urban area or forest. There is still a problem in providing a GNSS attitude in such common conditions.

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  • The study aimed to create an easy-to-use gel microarray test for detecting influenza viruses, assessing their subtypes and resistance to neuraminidase inhibitors.
  • A single user could perform up to 24 tests in 8 hours with high sensitivity, especially for the A/H1 pdm09 HA gene that detected fewer than 100 gene copies.
  • The test results for influenza typing and subtyping matched with traditional RT-PCR results over 97% of the time, showcasing its potential as a reliable diagnostic tool.
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  • Simplifying the microarray workflow is essential for developing diagnostics for MDR-TB that can be used in low-resource settings; this involves integrating multiple processes into a single microfluidic chamber.* -
  • The described protocol utilizes a 9-plex asymmetric master mix and can accurately genotype MDR-TB in just 6 hours using a minimum of 1,000 cell equivalents of genomic DNA.* -
  • This streamlined approach reduces the complexity and time involved in microarray diagnostics, making it more practical for everyday use in clinical settings.*
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We developed a simplified microarray test for detecting and identifying mutations in rpoB, katG, inhA, embB, and rpsL and compared the analytical performance of the test to that of phenotypic drug susceptibility testing (DST). The analytical sensitivity was estimated to be at least 110 genome copies per amplification reaction. The microarray test correctly detected 95.

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Background: Genetic polymorphisms in the CYP2C9 and VKORC1 genes have been linked to sensitivity of the anticoagulant drug warfarin. The aim of this study is to demonstrate a method for warfarin sensitivity genotyping using gel element microarray technology in a simplified workflow from sample collection to analysis and detection.

Methods: We developed an integrated amplification microarray system combining PCR amplification, target labeling, and microarray hybridization within a single, closed-amplicon "lateral flow cell" for genotyping three single nucleotide polymorphisms (SNPs) that influence warfarin response.

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Detection of methicillin-resistant Staphylococcus aureus (MRSA) is important for prevention and control of MRSA infections, but the discovery of mecA dropouts and SCCmec junction sequences with homology to coagulase-negative staphylococci (CoNS) has challenged several real-time PCR tests. The objective of this study was to develop a user-friendly, gel element microarray test for MRSA detection, to estimate the analytical performance characteristics of the test on bacterial isolates, and to perform an initial evaluation of the test on nasopharyngeal swabs from patients known to have a high prevalence of S. aureus containing mecA dropouts.

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By modifying polymer compositions and cross-linking reagents, we have developed a simple yet effective manufacturing strategy for copolymerized three-dimensional gel element arrays. A new gel-forming monomer, 2-(hydroxyethyl) methacrylamide (HEMAA), was used. HEMAA possesses low volatility and improves the stability of copolymerized gel element arrays to on-chip thermal cycling procedures relative to previously used monomers.

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  • A genome-independent microarray and novel statistical methods were utilized to analyze and compare the genetic fingerprints of different Bacillus strains against their known classifications.
  • A synthetic DNA standard was employed to assess variations in the processing of these genetic analyses.
  • The findings contributed to developing recommended practices for microbial forensics and clinical diagnostics.
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Activity measurements by radioisotopic methods and cultural and molecular approaches were used in parallel to investigate the microbial biodiversity and its physiological potential in formation waters of the Samotlor high-temperature oil reservoir (Western Siberia, Russia). Sulfate reduction with rates not exceeding 20 nmol of H(2)S liter(-1) day(-1) occurred at 60 and 80 degrees C. In upper horizons (AB, A, and B), methanogenesis (lithotrophic and/or acetoclastic) was detected only in wells in which sulfate reduction did not occur.

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A series of biochip readers developed for gel-based biochips includes three imaging models and a novel nonimaging biochip scanner. The imaging readers, ranging from a research-grade versatile reader to a simple portable one, use wide-field objectives and 12-bit digital large-coupled device cameras for parallel addressing of multiple array elements. This feature is valuable for monitoring the kinetics of sample interaction with immobilized probes.

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