Publications by authors named "Alexander I M Sever"

Several interleukin-1 (IL-1) family members, including IL-1β and IL-18, require processing by inflammasome-associated caspases to unleash their activities. Here, we unveil, by cryoelectron microscopy (cryo-EM), two major conformations of the complex between caspase-1 and pro-IL-18. One conformation is similar to the complex of caspase-4 and pro-IL-18, with interactions at both the active site and an exosite (closed conformation), and the other only contains interactions at the active site (open conformation).

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Mitochondrial apoptotic signaling cascades lead to the formation of the apoptosome, a 1.1-MDa heptameric protein scaffold that recruits and activates the caspase-9 protease. Once activated, caspase-9 cleaves and activates downstream effector caspases, triggering the onset of cell death through caspase-mediated proteolysis of cellular proteins.

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Article Synopsis
  • Scientists have used something called the HMQC pulse sequence to study big protein groups, which are special proteins made up of many smaller pieces.
  • This method helps them see different types of signals from these proteins more clearly.
  • They even created a faster version of the method that makes it easier to see important details in proteins that weigh between 100,000 to 1,000,000 times heavier than a hydrogen atom!
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Article Synopsis
  • DegP is a versatile protein in gram-negative bacteria that acts as both a protease and chaperone, helping to maintain protein balance and manage the transport of virulence factors.
  • The protein can form a stable hexameric structure when inactive, but changes to different oligomeric forms with increased proteolytic activity when interacting with substrate proteins or membranes.
  • Recent studies using advanced techniques like NMR and cryo-EM show that without substrates, DegP exists in various oligomeric states influenced by factors like ionic strength and temperature, allowing it to quickly adapt to different biological challenges.
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Various activation methods are available for the fragmentation of gaseous protein complexes produced by electrospray ionization (ESI). Such experiments can potentially yield insights into quaternary structure. Collision-induced dissociation (CID) is the most widely used fragmentation technique.

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The properties of electrosprayed protein ions continue to be enigmatic, owing to the absence of high-resolution structure determination methods in the gas phase. There is considerable evidence that under properly optimized conditions these ions preserve solution-like conformations and interactions. However, it is unlikely that these solution-like conformers represent the "intrinsic" structural preferences of gaseous proteins.

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