Publications by authors named "Aldape K"

Background: Our group and others have recently identified four molecular groups of meningioma, with unique underlying biology and outcomes. The relevance of group-specific metabolite profiles (particularly among hypermetabolic tumours), has not been explored.

Methods: We performed untargeted metabolic profiling of meningiomas representing each molecular group and WHO grade.

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Background: Brain intraparenchymal schwannoma is a rare clinical entity, generally curable with adequate resection.

Methods And Results: We describe a case in a male patient first presenting at 19 months of age, the youngest reported age for this lesion. It also appears to be the first case connected to a germline TSC2 p.

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Background: Meningiomas exhibit considerable clinical and biological heterogeneity. We previously identified four distinct molecular groups (immunogenic, NF2-wildtype, hypermetabolic, proliferative) that address much of this heterogeneity. Despite the utility of these groups, the stochasticity of clustering methods and the use of multi-omics data for discovery limits the potential for classifying prospective cases.

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Importance: Molecular techniques, including next-generation sequencing, genomic copy number profiling, fusion transcript detection, and genomic DNA methylation arrays, are now indispensable tools for the workup of central nervous system (CNS) tumors. Yet there remains a great deal of heterogeneity in using such biomarker testing across institutions and hospital systems. This is in large part because there is a persistent reluctance among third-party payers to cover molecular testing.

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Background: Intracerebral schwannomas are rare tumors resembling their peripheral nerve sheath counterparts but localized in the CNS. They are not classified as a separate tumor type in the 2021 WHO classification. This study aimed to compile and characterize these rare neoplasms morphologically and molecularly.

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Article Synopsis
  • Adult primary leptomeningeal gliomatosis (PLG) is a rare and aggressive disease that affects the meninges with glial tumor infiltration but no obvious brain mass, and it has not been thoroughly studied at the molecular level.
  • In a study of six PLG patients, all showed leptomeningeal enhancement; most were diagnosed via biopsy revealing astrocytic gliomas with notable genetic mutations, including IDH-wildtype and TERT promoter alterations, which indicated similarities to adult-type glioblastoma.
  • All patients unfortunately died from the disease, with a median survival of just 24 days after diagnosis, although one case with early intervention survived significantly longer, suggesting that early detection and treatment may
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Diffuse glioneuronal tumor with oligodendroglioma-like features and nuclear clusters (DGONC) is a rare brain tumor of the central nervous system (CNS). Although only a few cases of DGONC have been reported following the initial description of the tumor, they have a distinct DNA methylation pattern and share a recurrent chromosomal finding of monosomy 14. We encountered a seven-year-old boy who presented with seizures and was found to have a left frontal and suprasellar mass.

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Atypical teratoid/rhabdoid tumor (ATRT) is an aggressive, malignant embryonal tumor with dismal long-term survival despite aggressive multimodal therapy. While this tumor typically presents in infancy or early childhood, there are published case reports of adult-onset ATRT. Making prognostic conclusions or therapeutic decisions for this older patient population remains challenging due to the paucity of these reports.

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  • This study focuses on the classification of glioma cases at Lagos University Teaching Hospital, utilizing the 2021 WHO brain tumor classification that combines histomorphology and molecular features, despite limited resources.
  • Of the 56 brain tumor cases examined, 52 were assessed, revealing that 35% of the initial diagnoses changed after applying the WHO criteria, with some diagnoses being upgraded and others downgraded.
  • The results emphasize the importance of molecular testing in improving brain tumor diagnoses in resource-limited settings like Nigeria and highlight the challenges faced in global health disparities in neuro-oncology.
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  • - The study validates a new DNA methylation-based predictor for meningiomas that has been enhanced for use with modern methylation arrays and shows improved accuracy over the standard 2021 WHO grading system.
  • - It uses data from 1,347 meningioma cases, including prospective cases and an external cohort, demonstrating that both the new and original models effectively predict early postoperative recurrence, especially within specific risk subgroups.
  • - The new predictor, which is simpler with fewer features, allows for better clinical decision-making, including the use of adjuvant radiotherapy for high-risk patients, and is available as an easy-to-use tool for improved patient stratification in clinical trials.
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Adolescents and young adults (AYAs; ages 15-39 years) are a vulnerable population facing challenges in oncological care, including access to specialized care, transition of care, unique tumor biology, and poor representation in clinical trials. Brain tumors are the second most common tumor type in AYA, with malignant brain tumors being the most common cause of cancer-related death. The 2021 WHO Classification for central nervous system (CNS) Tumors highlights the importance of integrated molecular characterization with histologic diagnosis in several tumors relevant to the AYA population.

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Astrocytomas that harbor recurrent genomic alterations in MYB or MYBL1 are a group of Pediatric-type diffuse low-grade gliomas that were newly recognized in the 2021 WHO Classification of Tumors of the Central Nervous System. These tumors are described in the WHO classification as harboring fusions in MYB or MYBL1. In this report, we examine 14 consecutive cases in which a MYB or MYBL1 alteration was identified, each with diagnostic confirmation by genome-wide DNA methylation profiling (6 Angiocentric gliomas and 8 Diffuse astrocytomas, MYB- or MYBL1-altered), for their specific genomic alterations in these genes.

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Article Synopsis
  • Brain metastases (BMs) are the most common and lethal brain tumors, primarily originating from lung adenocarcinoma (LUAD), yet reliable predictors for their development are currently lacking.
  • Researchers analyzed 402 tumor and plasma samples from LUAD patients to create a predictive model based on DNA methylation signatures, combining it with clinical data for personalized risk assessments of developing BMs.
  • The study also identified unique genetic markers and immune cell changes that could aid in early detection of BMs through non-invasive tests, enhancing the potential for targeted and effective treatments.
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  • Oligodendroglioma, particularly the IDH-mutant and 1p/19q-codeleted type, shows varied outcomes based on patient age, with research indicating a bimodal age distribution.
  • Elevated expression and gene body hypermethylation of the HOXD12 gene were identified as significant factors linked to older patient age and shorter survival rates across multiple studies.
  • Analysis revealed that HOXD12 is more active in cancerous tissue and is associated with aggressive tumor characteristics and stem-like cell properties, suggesting it plays a critical role in the progression of oligodendroglioma in older patients.
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  • - Meningiomas are the most common primary brain tumors and are significant in neuropathology, with the 2021 WHO Classification introducing new molecular markers for their grading, particularly regarding TERT promoter changes and CDKN2A/B deletions for grade 3 tumors.
  • - The cIMPACT-NOW Steering Committee formed a working group post-publication to clarify existing grading questions and assess new research that wasn't included in the 2021 classification, focusing on improving standards for diagnosing meningiomas.
  • - The update suggests more standardized evaluations for brain invasion, recommends advanced molecular testing in certain situations, and introduces a potential grade 2 classification for some cases with specific chromosomal deletions, while acknowledging that some areas still need
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Background: Ependymoma (EPN) is not a uniform disease but represents different disease types with biological and clinical heterogeneity. However, the pattern of when and where different types of EPN relapse is not yet comprehensively described.

Methods: We assembled 269 relapsed intracranial EPN from pediatric (n = 233) and adult (n = 36) patients from European and Northern American cohorts and correlated DNA methylation patterns and copy-number alterations with clinical information.

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  • Treatment for meningiomas primarily involves surgery and sometimes radiation, but patient responses can vary significantly.
  • Researchers analyzed data from 2,824 meningiomas, including both retrospective and prospective information, to identify molecular biomarkers that predict treatment response.
  • The study found that complete tumor removal and proper treatment of the dural margin significantly improve survival rates, and developed a new molecular model that better predicts how patients will respond to radiotherapy compared to traditional classification methods.
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The co-occurrence of chromosome 10 loss and chromosome 7 gain in gliomas is the most frequent loss-gain co-aneuploidy pair in human cancers. This phenomenon has been investigated since the late 1980s without resolution. Expanding beyond previous gene-centric studies, we investigated the co-occurrence in a genome-wide manner, taking an evolutionary perspective.

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  • The Open Pediatric Cancer (OpenPedCan) Project builds upon the earlier Open Pediatric Brain Tumor Atlas, analyzing data from over 6,000 pediatric cancer patients and providing a vast multi-omic dataset from various tumor types.
  • The project integrates multiple genomic and proteomic data types, allowing researchers to access harmonized data through platforms like GitHub, CAVATICA, and AWS.
  • OpenPedCan enhances molecular subtyping of tumors by incorporating methylation information, facilitating research that supports more accurate diagnosis and treatment strategies in pediatric cancer.
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