Publications by authors named "Akihito Ikeda"

A plant used in an Indonesian traditional herbal medicine as a diabetes treatment and known locally as "Jampu Salo" was collected on Sulawesi Island, Indonesia. It was identified as (C. B.

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A split-protein system is a simple approach to introduce new termini which are useful as modification sites in protein engineering, but has been adapted mainly for monomeric proteins. Here we demonstrate the design of split subunits of the 60-mer artificial fusion-protein nanocage TIP60. The subunit fragments successfully reformed the cage structure in the same manner as prior to splitting.

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The steric zipper is a common hydrophobic packing structure of peptide side chains that forms between two adjacent β-sheet layers in amyloid and related fibrils. Although previous studies have revealed that peptide fragments derived from native protein sequences exhibit steric zipper structures, their de novo designs have rarely been studied. Herein, steric zipper structures were artificially constructed in the crystalline state by metal-induced folding and assembly of tetrapeptide fragments Boc-3pa-X-3pa-X-OMe (3pa: β-(3-pyridyl)-l-alanine; X and X: hydrophobic amino acids).

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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein (S protein) is highly N-glycosylated, and a "glycan shield" is formed to limit the access of other molecules; however, a small open area coincides with the interface to the host's receptor and also neutralising antibodies. Most of the variants of concern have mutations in this area, which could reduce the efficacy of existing antibodies. In contrast, N-glycosylation sites are relatively invariant, and some are essential for infection.

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Article Synopsis
  • Vasohibins play a crucial role in regulating processes like angiogenesis, tumor growth, and neuronal differentiation through their interaction with the small vasohibin-binding protein (SVBP).
  • Recent studies, including crystal structure determinations, have revealed insights into the complex's formation and function, but the regulatory mechanisms remain unclear.
  • This research specifically highlights the discovery of a novel domain-swapped heterotetramer structure that may influence enzyme activity due to the stabilization provided by conserved residues and differences in molecular dynamics compared to simpler structures.
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[Consideration on SNR in Synthetic MRI].

Nihon Hoshasen Gijutsu Gakkai Zasshi

July 2019

Synthetic magnetic resonance imaging (MRI) can create different contrast weighted images by quantifying the T, T, and proton density values of the subjects from a single series of scan data. It has not been clarified how the signal to noise ratio (SNR) of the synthesized image varies depending on imaging parameters. We investigated the change of SNR in synthesized MR images by the experiment using self-made phantom.

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