Publications by authors named "Ailsa J Carlisle"

Goniodysgenesis is a developmental abnormality of the anterior chamber of the eye. It is generally considered to be congenital in dogs (), and has been associated with glaucoma and blindness. Goniodysgenesis and early-onset glaucoma initially emerged in Border Collies in Australia in the late 1990s and have subsequently been found in this breed in Europe and the USA.

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Article Synopsis
  • The FANTOM5 project mapped transcription initiation events in human and mouse genomes with high precision using CAGE technology and single-molecule sequencing.
  • Over 3,000 diverse samples, including primary cells and tissues, were analyzed through a standardized process starting from RNA quality assessment to generating transcription initiation frequencies.
  • The analysis identified around 200,000 (human) and 150,000 (mouse) non-overlapping peaks, enabling the annotation of both known and novel promoters and providing insights into transcriptional regulation in different cellular states.
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MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As part of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) project, we created an integrated expression atlas of miRNAs and their promoters by deep-sequencing 492 short RNA (sRNA) libraries, with matching Cap Analysis Gene Expression (CAGE) data, from 396 human and 47 mouse RNA samples. Promoters were identified for 1,357 human and 804 mouse miRNAs and showed strong sequence conservation between species.

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Lentiviral vectors have recently emerged as an efficient method of transgene delivery to the germline of animals. We now demonstrate that combining this efficiency with embryo splitting procedures enables the production of monozygotic twins, one of which is transgenic. We propose that this approach can be used to generate animals in which cell or tissue transplantation can be achieved without the use of immunosuppressive regimes.

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