Publications by authors named "Aigen Fu"

The sophisticated regulation of state transition is required to maintain optimal photosynthetic performance under fluctuating light condition, through balancing the absorbed light energy between photosystem II and photosystem I. This exquisite process incorporates phosphorylation and dephosphorylation of light-harvesting complexes and PSII core subunits, accomplished by thylakoid membrane-localized kinases and phosphatases that have not been fully identified. In this study, one Chlamydomonas high light response gene, THYLAKOID ENRICHED FRACTION 8 (TEF8), was characterized.

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GmAMS1 is the only functional AMS and works with GmTDF1-1 and GmMS3 to orchestrate the tapetum degeneration in soybean. Heterosis could significantly increase the production of major crops as well as soybean [Glycine max (L.) Merr.

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Plants delicately regulate endogenous auxin levels through the coordination of transport, biosynthesis, and inactivation, which is crucial for growth and development. While it is well-established that the actin cytoskeleton can regulate auxin levels by affecting polar transport, its potential role in auxin biosynthesis has remained largely unexplored. Using LC-MS/MS-based methods combined with fluorescent auxin marker detection, we observed a significant increase in root auxin levels upon deletion of the actin bundling proteins AtFIM4 and AtFIM5.

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  • This study explores how sugars and acids contribute to the flavor and quality of fleshy fruits, particularly apples during their development.
  • Researchers used advanced techniques like ATAC-seq and RNA-seq to analyze genome-wide chromatin accessibility, leading to the creation of a transcriptional regulatory network related to sugar and acid accumulation.
  • The findings identify key transcription factors that regulate the metabolism of sugars and acids in apples, which could help improve apple quality in the future.
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  • Plant Elicitor Peptides (Peps) typically induce immune responses and inhibit root growth, but this study discovered they can also promote root hair growth independently of their usual receptors, PEPR1 and PEPR2.
  • Researchers found that certain gene promoters were highly active in root hairs, and disrupting a specific gene led to reduced root hair density and length, highlighting its importance in root hair development.
  • The study suggested that Peps regulate root hair formation by modulating specific gene expression and involve calcium signaling, revealing new insights into the role of Peps in plant growth.
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Abscisic acid (ABA) and gibberellins (GA) antagonistically mediate several biological processes, including seed germination, but the molecular mechanisms underlying ABA/GA antagonism need further investigation, particularly any role mediated by a transcription factors module. Here, we report that the DELLA protein RGL2, a repressor of GA signaling, specifically interacts with ABI4, an ABA signaling enhancer, to act as a transcription factor complex to mediate ABA/GA antagonism. The rgl2, abi3, abi4 and abi5 mutants rescue the non-germination phenotype of the ga1-t.

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PSI is a sophisticated photosynthesis protein complex that fuels the light reaction of photosynthesis in algae and vascular plants. While the structure and function of PSI have been studied extensively, the dynamic regulation on PSI oligomerization and high light response is less understood. In this work, we characterized a high light-responsive immunophilin gene FKB20-2 (FK506-binding protein 20-2) required for PSI oligomerization and high light tolerance in Chlamydomonas (Chlamydomonas reinhardtii).

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  • The Hexi Corridor is a key vegetable production area in China, with research focusing on the impact of livestock manure (LM) on soil heavy metal (HM) pollution, particularly in alkaline, unpolluted soils.
  • A 4-year study using pig manure (PM) and chicken manure (CM) at various application rates revealed significant increases in heavy metals like Cu, Zn, Pb, Cd, and Ni in the topsoil, with potential soil threshold exceedance in the future.
  • It was recommended that pig manure be used, with an optimal application rate of 30 t/ha, to ensure sustainable vegetable production over the next 20 years in these soils.
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Vacuolar sugar transporters transport sugar across the tonoplast, are major players in maintaining sugar homeostasis, and therefore play vital roles in plant growth, development, and biomass yield. In this study, we analyzed the physiological roles of the tonoplast monosaccharide transporter 2 (TMT2) in Arabidopsis. In contrast to the wild type (WT) that produced uniform seedlings, the mutant produced three types of offspring: un-germinated seeds (UnG), seedlings that cannot form true leaves (), and seedlings that develop normally ().

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Excess light causes severe photodamage to photosystem II (PSII) where the primary charge separation for electron transfer takes place. Dissection of mechanisms underlying the PSII maintenance and repair cycle in green algae promotes the usage of genetic engineering and synthetic biology to improve photosynthesis and biomass production. In this study, we systematically analyzed the high light (HL) responsive immunophilin genes in Chlamydomonas (Chlamydomonas reinhardtii) and identified one chloroplast lumen-localized immunophilin, CYN28, as an essential player in HL tolerance.

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Excess phosphate (Pi) is stored into the vacuole through Pi transporters so that cytoplasmic Pi levels remain stable in plant cells. We hypothesized that the vacuolar Pi transporters may harbor a Pi-sensing mechanism so that they are activated to deliver Pi into the vacuole only when cytosolic Pi reaches a threshold high level. We tested this hypothesis using Vacuolar Phosphate Transporter 1 (VPT1), a SPX domain-containing vacuolar Pi transporter, as a model.

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  • Magnesium (Mg) is crucial for photosynthesis as it is a cofactor for various enzymes in chloroplasts and is central to chlorophyll molecules.
  • Researchers identified two transport proteins in Arabidopsis, MGR8 and MGR9, essential for Mg transport across the chloroplast envelope; mutations in both led to severe growth defects like albino ovules and chlorotic seedlings.
  • The study found that MGR8 and MGR9 not only complement a strain lacking Mg uptake but also their functioning is vital for chloroplast Mg uptake, with double mutants showing increased sensitivity to Mg deficiency and lower chloroplast Mg levels compared to wild-type plants.
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Magnesium (Mg) is an essential nutrient for all life forms. In fungal and plant cells, the majority of Mg is stored in the vacuole but mechanisms for Mg transport into the vacuolar store are not fully understood. Here we demonstrate that members of ancient conserved domain proteins (ACDPs) from Saccharomyces cerevisiae and Arabidopsis thaliana function in vacuolar Mg sequestration that enables plant and yeast cells to cope with high levels of external Mg.

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Magnesium (Mg), an essential structural component of chlorophyll, is absorbed from the soil by roots and transported to shoots to support photosynthesis in plants. However, the molecular mechanisms underlying root-to-shoot Mg translocation remain largely unknown. We describe here the identification of four plasma membrane (PM)-localized transporters, named Mg release transporters (MGRs), that are critical for root-to-shoot Mg transport in Arabidopsis.

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  • The study investigates the mitogenome (mtDNA) of cultivated soybean specifically focusing on the 'Williams 82' cultivar, revealing it consists of two circular chromosomes, a structure that differs significantly from other soybean varieties.
  • Through comparative analyses, the research highlights how structural variations in mtDNA arise primarily from recombination events, leading to distinct genetic regions in different soybean accessions.
  • The findings categorize both wild and cultivated soybeans into five cytoplasmic groups, indicating a complex evolutionary history influenced by interspecific hybridization that has shaped modern soybean genetics.
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  • Alternative oxidase (AOX) and plastid terminal oxidase (PTOX) play crucial roles in electron transfer within mitochondria and chloroplasts, respectively, highlighting their importance in plant cellular respiration.
  • The study found that different AOX homologs (specifically AOX1b, 1c, 1d, and AOX2) can partly restore the function of PTOX in chloroplasts, while AOX1a shows a limited ability to do so, indicating diversity in their functional roles.
  • The research also demonstrated that only AOXs located in chloroplasts can compensate for PTOX deficiencies, revealing insights into the interactions between mitochondria and chloroplasts as well as protein targeting mechanisms in
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AtCYP38, a thylakoid lumen localized immunophilin, is found to be essential for photosystem II assembly and maintenance, but how AtCYP38 functions in chloroplast remains unknown. Based on previous functional studies and its crystal structure, we hypothesize that AtCYP38 should function via binding its targets or cofactors in the thylakoid lumen. To identify potential interacting proteins of AtCYP38, we first adopted ATTED-II and STRING web-tools, and found 12 proteins functionally related to AtCYP38.

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Identification and functional analysis of the male sterile gene MS6 in Glycine max. Soybean (Glycine max (L.) Merr.

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  • The chloroplast (cp) genome of a species from the Rutaceae family, important for horticulture and medicine, was fully sequenced using next-generation sequencing.
  • The cp genome measures 160,179 base pairs and consists of large single-copy, small single-copy, and inverted repeat regions.
  • A phylogenomic analysis indicated that the species is closely related to another species, which will help in understanding the evolution of chloroplast genomes in this plant family.
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The basic helix-loop-helix (bHLH) transcription factor family is one of the largest transcription factor gene families in Arabidopsis thaliana, and contains a bHLH motif that is highly conserved throughout eukaryotic organisms. Members of this family have two conserved motifs, a basic DNA binding region and a helix-loop-helix (HLH) region. These proteins containing bHLH domain usually act as homo- or heterodimers to regulate the expression of their target genes, which are involved in many physiological processes and have a broad range of functions in biosynthesis, metabolism and transduction of plant hormones.

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Manganese (Mn) serves as an essential cofactor for many enzymes in various compartments of a plant cell. Allocation of Mn among various organelles thus plays a central role in Mn homeostasis to support metabolic processes. We report the identification of a Golgi-localized Mn transporter (named PML3) that is essential for rapid cell elongation in young tissues such as emerging leaves and the pollen tube.

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C-terminal peptidase (Ctp) cleaves the C-terminal extension of the D1 precursor (pD1) to form mature D1. Among the three homologs CtpA, CtpB, and CtpC in photosynthetic organisms only the first is capable of processing pD1 while the roles of CtpB and CtpC remain elusive. Phylogenetic analysis of Ctps from photosynthetic organisms revealed that CtpA has diverged early from CtpB and CtpC during evolution implying distinct roles for the Ctps.

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Arabidopsis cyclophilin38 (CYP38) is a thylakoid lumen protein critial for PSII assembly and maintenance, and its C-terminal region serves as the target binding domain. We hypothesized that four conserved residues (R290, F294, Q372, and F374) in the C-terminal domain are critical for the structure and function of CYP38. In yeast two-hybrid and protein pull-down assays, CYP38s with single-sited mutations (R290A, F294A, Q372A, or F374A) did not interact with the CP47 E-loop as the wild-type CYP38.

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Nitrate (NO ) is a source of plant nutrients and osmolytes, but its delivery machineries under osmotic and low-nutrient stress remain largely unknown. Here, we report that AtICln, an Arabidopsis homolog of the nucleotide-sensitive chloride-conductance regulatory protein family (ICln), is involved in response to osmotic and low-NO stress. The gene AtICln, encoding plasma membrane-anchored proteins, was upregulated by various osmotic stresses, and its disruption impaired plant tolerance to osmotic stress.

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Chlorophyll (Chl) is essential for photosynthetic reactions and chloroplast development. While the enzymatic pathway for Chl biosynthesis is well established, the regulatory mechanism underlying the homeostasis of Chl levels remains largely unknown. In this study, we identified (), which functions in the regulation of chlorophyll biosynthesis.

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