Members of the TREK family of two-pore domain potassium channels are highly sensitive to regulation by membrane lipids, including phosphatidylinositol-4,5-bisphosphate (PIP). Previous studies have demonstrated that PIP increases TREK-1 channel activity; however, the mechanistic understanding of the conformational transitions induced by PIP remain unclear. Here, we used coarse-grained molecular dynamics and atomistic molecular dynamics simulations to model the PIP-binding site on both the up and down state conformations of TREK-1.
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