Publications by authors named "Abiodun Adesiyun"

We used whole genome sequencing (WGS) as an epidemiologic surveillance tool to elucidate the transmission dynamics of Shiga toxin-producing (STEC) strains along the beef production chain in South Africa. Isolates were obtained from a cattle farm, abattoirs and retail outlets. Isolates were analysed using WGS on a MiSeq platform (Illumina, San Diego, CA, USA) and phylogenetic analysis was carried out.

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  • The study focused on characterizing a common bacterial pathogen found in beef and its products using whole-genome sequencing (WGS) on 24 isolates.
  • The most prevalent sequence type was identified as ST204, along with several others, and many isolates carried genes related to virulence and antibiotic resistance.
  • Key findings emphasized the potential risk this bacterium poses to public health due to its presence in food environments, highlighting both its virulence factors and environmental resistance traits.
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  • The study analyzed 60 bacterial isolates from the beef production chain in Gauteng, South Africa, using whole-genome sequencing and bioinformatics to determine their genomic characteristics.
  • Researchers identified seven sequence types (STs) and six clonal complexes (CCs), revealing that ST204 and CC204 were the most prevalent among the samples.
  • The investigation uncovered 44 virulence factors, two antimicrobial resistance (AMR) genes, and highlighted that certain genes associated with virulence and resistance were present across all isolates, indicating potential therapeutic concerns for these pathogens.
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complex (MTBC) is a group of bacteria responsible for causing tuberculosis in animals and humans. In South Africa (S.A), slaughterhouses are registered by the government and closely inspected and audited for hygienic slaughter practices.

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  • * A study found a 28% prevalence of Listeria spp. in various beef products in Gauteng, with pathogenic serogroups 4b-4d-4e and 1/2a-3a identified, which carry virulence-associated genes.
  • * The research highlighted that regional factors, product type, and storage temperature influenced Listeria occurrence and stressed the need for improved food safety measures to prevent future outbreaks.
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Abattoir workers are liable to zoonotic infections from animals and animal products, primarily to diseases with asymptomatic and chronic clinical manifestations in animals, such as brucellosis. No published reports exist on the seroprevalence of brucellosis in abattoir workers in South Africa. Therefore, this cross-sectional study was conducted to estimate the occurrence and risk factors for exposure in abattoir workers in Gauteng Province.

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Background: Q fever and toxoplasmosis are economically important zoonoses as they cause considerable losses in livestock (cattle, sheep and goats) and wildlife (antelopes, giraffes, lions, and cheetahs) through reproductive disorders such as abortions and stillbirths. Q fever and toxoplasmosis testing in South Africa is conducted by the Agricultural Research Council-Onderstepoort Veterinary Research (ARC-OVR). However, both zoonoses are understudied and not monitored in South Africa as they are not considered controlled or notifiable diseases in the Animal Disease Act 35 of 1984.

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  • Whole-genome sequencing was performed on 110 strains of bacteria isolated from cattle farms, abattoirs, and retail outlets in Gauteng, South Africa, to analyze their genetic makeup.
  • The study identified 14 distinct sequence types (STs) and found that all strains carried antimicrobial resistance genes, with 13 specific resistance genes and 23 virulence genes detected across all isolates.
  • The findings highlight significant diversity in the genetic profiles based on the sources and types of samples, marking the first genomic characterization of these bacteria in South Africa's beef production system and raising concerns about food safety.
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was investigated in kidneys ( = 305) from slaughtered livestock in the Gauteng Province abattoirs, South Africa, using a culture medium to isolate , followed by the qPCR to detect DNA. The gene region was amplified, sequenced, and analyzed for qPCR-positive samples or isolates. The overall frequency of isolation of spp.

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  • A study in South Africa's Limpopo province assessed the prevalence of Q fever in cattle, showing a 24.28% seroprevalence among 383 cattle tested for antibodies.
  • The research identified that larger herd sizes (greater than 150 cattle) significantly increased the risk of being seropositive for the disease, as well as impacting molecular prevalence found through PCR testing.
  • The findings indicate that Q fever is actively circulating in the region, evidenced by the presence of the pathogen via both PCR and ELISA tests, even in the absence of antibodies in some cases.
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Determination of the immune response of dogs by measuring the antibody levels (utilizing MAT) and levels of cytokines (TNF-α, IL-4 and IFN-γ) post-vaccination with locally produced killed whole-celled Leptospiral vaccine and post-challenge with a locally isolated Leptospira icterohaemorrhagiae Copenhageni strain. For assessment of immunity of the vaccine serum antibodies were detected before and after vaccination and challenge in three studies. The effects of the challenge were determined by a variety of parameters including reisolation of the challenge Leptospira spp.

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This study was conducted to determine the phylogenies of Salmonella strains isolated from cross-sectional studies conducted at hatcheries, broiler farms, processing plants, and retail outlets (broiler production chain) in Trinidad and Tobago over 4 yr (2016-2019). Whole-genome sequencing (WGS) was used to characterize Salmonella isolates. Core genome phylogenies of 8 serovars of public health significance were analyzed for similarities in origin and relatedness.

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Introduction: The occurrence of methicillin-resistant Staphylococcus aureus (MRSA) in pets and their owners has increased due to the misuse and abuse of antibiotics. This study compared the prevalence of MRSA and Staphylococcus aureus strains in pets and their owners in urban and rural communities in Trinidad.

Methodology: Questionnaires were administered to gather demographic and risk factor data for MRSA for human participants, and their pets.

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Abstract: This study determined the prevalence, characteristics, and risk factors of Campylobacter species contamination of chicken carcasses sold at informal poultry outlets in Gauteng province, South Africa. Within six townships, 151 chicken carcasses were collected from 47 outlets. Carcass swab, cloacal swab, and carcass drip samples were collected from each chicken, along with a matched questionnaire on risk factors regarding Campylobacter contamination.

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In South Africa, there is a shortage of epidemiologic data on Shiga toxin-producing Escherichia coli (STEC) in the beef production chain. This study was conducted to characterise STEC isolates originating from three studies conducted in a cattle feedlot, beef abattoirs and retail outlets in Gauteng province, South Africa. Polymerase chain reaction was used to detect virulence genes, the Epsilometer test to assess antimicrobial susceptibility, pulsed-field gel electrophoresis (PFGE) to investigate genetic relatedness of isolates, and conventional serotyping for phenotypic identification.

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  • The study focuses on multidrug-resistant (MDR) strains of a significant foodborne pathogen found in broiler chicken farms and processing plants in Trinidad and Tobago.
  • Eight strains belonging to various serovars showed evidence of drug resistance, with seven strains carrying at least three antibiotic resistance (AMR) genes and some possessing quinolone resistance genes.
  • The closed genomes obtained from this research will aid in future tracking of sources and investigations related to outbreaks both locally and globally.
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  • - The study analyzed 60 Listeria monocytogenes isolates from various sources in Gauteng, South Africa, using multiple-locus variable-number analysis (MLVA) to determine their genotypes and serogroups.
  • - The sources included raw beef, ready-to-eat products, carcass swabs, cattle environments, and feces, with findings showing significant distribution across these sample types.
  • - MLVA successfully identified genetic relations and differences among the isolates, revealing distinct patterns in tandem repeats (TRs) and leading to the identification of at least five MLVA types in the region.
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This cross-sectional study determined the serovars, antimicrobial resistance genes, and virulence factors of isolated from hatcheries, broiler farms, processing plants, and retail outlets in Trinidad and Tobago. in silico serotyping detected 23 different serovars where Kentucky 20.5% (30/146), Javiana 19.

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Abstract: This cross-sectional study was conducted to determine the occurrence, risk factors, and characteristics of Salmonella isolates recovered from imported fertile broiler hatching eggs, hatcheries, and broiler farms in Trinidad and Tobago. Standard methods were used to isolate and characterize Salmonella isolates from two broiler hatcheries and 27 broiler farms in the country. The frequency of isolation of Salmonella was 0.

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  • Bovine tuberculosis (bTB) is a significant zoonotic disease impacting economies globally, with this study aimed at assessing its prevalence in livestock at abattoirs using a gamma interferon assay.
  • The study involved collecting and analyzing blood samples from 410 animals (369 cattle and 41 sheep) across 15 abattoirs in Gauteng province, revealing a bTB prevalence of 4.4% in cattle, with variation among different locations.
  • Results highlight the limitations of traditional meat inspection methods for disease surveillance, as all sampled animals were initially deemed bTB-free, raising concerns about the potential zoonotic transmission risk to workers and consumers.
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This cross-sectional study determined the prevalence, characteristics, and risk factors for contamination of chicken with at four operating broiler processing plants in Trinidad. Standard methods were used to isolate and characterize the isolates. The overall prevalence of at the four processing plants was 27.

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Salmonella enterica is a highly important foodborne pathogen worldwide. We report the complete genome sequence of a sequence type 14 Salmonella enterica serotype Senftenberg strain carrying the gene in a plasmid isolated from broken chicken eggshells in Trinidad and Tobago, obtained by using a combination of long- and short-read sequencing.

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The study determined the antimicrobial resistance profiles of on chickens processed and retailed at outlets of the informal markets in Gauteng province, South Africa. The study also investigated the relationship of antimicrobial resistant to the source and type of samples and their serotypes. Carcass swabs, cloacal swabs and carcass drips were randomly collected from each of 151 slaughtered chickens from six townships.

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