Publications by authors named "Abhishek S Kumar"

Dormancy is an essential biological process for the propagation of many life forms through generations and stressful conditions. Early embryos of many mammals are preservable for weeks to months within the uterus in a dormant state called diapause, which can be induced in vitro through mTOR inhibition. Cellular strategies that safeguard original cell identity within the silent genomic landscape of dormancy are not known.

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Background And Purpose: COVID-associated mucormycosis (CAM) was as a dreadful complication in India. The state of Rajasthan, reported remarkably more patients than others but the cause for such geographical variation was unclear. The demography, clinical presentation and pathogens of CAM were studied.

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DNA and Histone 3 Lysine 27 methylation typically function as repressive modifications and operate within distinct genomic compartments. In mammals, the majority of the genome is kept in a DNA methylated state, whereas the Polycomb repressive complexes regulate the unmethylated CpG-rich promoters of developmental genes. In contrast to this general framework, the extra-embryonic lineages display non-canonical, globally intermediate DNA methylation levels, including disruption of local Polycomb domains.

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We report circularly polarised emission, with helicity opposite to the optical excitation, from a van der Waals heterostructure (HS) consisting of a monolayer MoS and three-layer WS. Selective excitation of the MoS layer confirms that this cross-polarized emission is due to the charge transfer from the WS layers to the MoS layer. We propose that the high levels of n-doping in the constituent layers due to sulphur vacancies and defects give rise to an enhanced transition rate of electrons from the valley of WS to the ' valley of MoS, which leads to the emission, counter polarized to the excitation.

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The segregation of definitive endoderm (DE) from bipotent mesendoderm progenitors leads to the formation of two distinct germ layers. Dissecting DE commitment and onset has been challenging as it occurs within a narrow spatiotemporal window in the embryo. Here, we employ a dual Bra/Sox17 reporter cell line to study DE onset dynamics.

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Article Synopsis
  • DNA methylation is essential during development for repressing retrotransposons, with key enzymes being Dnmt1 for maintenance and Dnmt3a/3b for de novo activity.
  • Research shows that Dnmt1 also has de novo methylation capabilities and specifically targets retrotransposons, which was analyzed using advanced sequencing techniques in methylation-depleted mouse embryonic stem cells.
  • The activity of Dnmt1 is dependent on Uhrf1, and its recruitment overlaps with certain epigenetic markers, indicating its dual role in both maintaining and initiating DNA methylation for stable repression during development.*
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Article Synopsis
  • Post-implantation embryogenesis involves complex developmental processes that are difficult to study in living organisms.
  • Researchers discovered that mouse embryonic stem cells (mESCs) form aggregates that, when placed in a specific extracellular matrix, develop into structured "trunk-like structures" (TLSs) resembling parts of early mouse embryos.
  • These TLSs demonstrate advanced self-organization and provide a valuable tool for exploring the mechanisms of post-implantation embryogenesis outside of the living mouse.
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During ontogeny, proliferating cells become restricted in their fate through the combined action of cell-type-specific transcription factors and ubiquitous epigenetic machinery, which recognizes universally available histone residues or nucleotides in a context-dependent manner. The molecular functions of these regulators are generally well understood, but assigning direct developmental roles to them is hampered by complex mutant phenotypes that often emerge after gastrulation. Single-cell RNA sequencing and analytical approaches have explored this highly conserved, dynamic period across numerous model organisms, including mouse.

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