Publications by authors named "Aberle D"

CT is crucial for diagnosing chest diseases, with image quality affected by spatial resolution. Thick-slice CT remains prevalent in practice due to cost considerations, yet its coarse spatial resolution may hinder accurate diagnoses. Our multicenter study develops a deep learning synthetic model with Convolutional-Transformer hybrid encoder-decoder architecture for generating thin-slice CT from thick-slice CT on a single center (1576 participants) and access the synthetic CT on three cross-regional centers (1228 participants).

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Spatially aligning two computed tomography (CT) scans of the lung using automated image registration techniques is a challenging task due to the deformable nature of the lung. However, existing deep-learning-based lung CT registration models are not trained with explicit anatomical knowledge. We propose the deformable anatomy-aware registration toolkit (DART), a masked autoencoder (MAE)-based approach, to improve the keypoint-supervised registration of lung CTs.

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Article Synopsis
  • Fibrosis is the abnormal buildup of connective tissue due to improper healing from injuries like lack of oxygen, infections, or trauma, affecting any organ and leading to dysfunction and failure.
  • It also plays a significant role in cancer development, making early diagnosis and monitoring vital for improving patient outcomes.
  • This paper specifically examines fibrosis in the genito-urinary system, highlighting current imaging technologies for detection and suggesting possible future research directions.
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  • Fibrosis is an abnormal buildup of connective tissue due to prolonged injuries like low oxygen, infections, or physical damage, which can lead to organ dysfunction and failure.
  • It is also linked to cancer development and progression, making early diagnosis and monitoring crucial for treatment and improving patient outcomes.
  • The text highlights the need for better understanding and application of advanced imaging techniques to detect fibrosis in abdominal organs, discussing both current technologies and future developments for early diagnosis.
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  • - Injury from factors like low oxygen, infections, or physical damage can disrupt normal tissue repair, leading to fibrosis, which affects organ function and can cause organ failure.
  • - Fibrosis plays a significant role in cancer development and progression, making early diagnosis and ongoing monitoring crucial for managing diseases and improving patients' quality of life.
  • - This work aims to review current imaging technologies used to detect fibrosis in thoracic organs and discuss future advancements in these imaging methods.
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  • The study focused on developing a deep learning model to identify severe left ventricular hypertrophy (SLVH) and dilated left ventricle (DLV) from chest X-rays (CXRs), which could help in early heart failure detection.
  • It analyzed 71,589 CXRs from nearly 25,000 patients, validated the model's performance against external data, and compared its accuracy to that of board-certified radiologists.
  • The model achieved strong results, outperforming radiologists in detecting abnormalities and providing a publicly available dataset to support further research in this area.
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The American College of Radiology created the Lung CT Screening Reporting and Data System (Lung-RADS) in 2014 to standardize the reporting and management of screen-detected pulmonary nodules. Lung-RADS was updated to version 1.1 in 2019 and revised size thresholds for nonsolid nodules, added classification criteria for perifissural nodules, and allowed for short-interval follow-up of rapidly enlarging nodules that may be infectious in etiology.

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Importance: The National Lung Screening Trial (NLST) found that screening for lung cancer with low-dose computed tomography (CT) reduced lung cancer-specific and all-cause mortality compared with chest radiography. It is uncertain whether these results apply to a nationally representative target population.

Objective: To extend inferences about the effects of lung cancer screening strategies from the NLST to a nationally representative target population of NLST-eligible US adults.

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The ACR created the Lung CT Screening Reporting and Data System (Lung-RADS) in 2014 to standardize the reporting and management of screen-detected pulmonary nodules. Lung-RADS was updated to version 1.1 in 2019 and revised size thresholds for nonsolid nodules, added classification criteria for perifissural nodules, and allowed for short-interval follow-up of rapidly enlarging nodules that may be infectious in etiology.

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The implementation of low-dose chest CT for lung screening presents a crucial opportunity to advance lung cancer care through early detection and interception. In addition, millions of pulmonary nodules are incidentally detected annually in the United States, increasing the opportunity for early lung cancer diagnosis. Yet, realization of the full potential of these opportunities is dependent on the ability to accurately analyze image data for purposes of nodule classification and early lung cancer characterization.

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The emerging field of liquid biopsy stands at the forefront of novel diagnostic strategies for cancer and other diseases. Liquid biopsy allows minimally invasive molecular characterization of cancers for diagnosis, patient stratification to therapy, and longitudinal monitoring. Liquid biopsy strategies include detection and monitoring of circulating tumor cells, cell-free DNA, and extracellular vesicles.

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Cosmic ray muons are massive, charged particles created from high energy cosmic rays colliding with atomic nuclei in Earth's atmosphere. Because of their high momenta and weak interaction, these muons can penetrate through large thicknesses of dense material before being absorbed, making them ideal for nondestructive imaging of objects composed of high-Z elements. A Giant Muon Tracker with two horizontal 8 × 6 in.

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Unlabelled: A greater understanding of molecular, cellular, and immunological changes during the early stages of lung adenocarcinoma development could improve diagnostic and therapeutic approaches in patients with pulmonary nodules at risk for lung cancer. To elucidate the immunopathogenesis of early lung tumorigenesis, we evaluated surgically resected pulmonary nodules representing the spectrum of early lung adenocarcinoma as well as associated normal lung tissues using single-cell RNA sequencing and validated the results by flow cytometry and multiplex immunofluorescence (MIF). Single-cell transcriptomics revealed a significant decrease in gene expression associated with cytolytic activities of tumor-infiltrating natural killer and natural killer T cells.

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  • Plasma cell-free DNA (cfDNA) serves as a noninvasive biomarker for identifying cell death across different organs, which can help in detecting and monitoring diseases.
  • The study presents a comprehensive tissue methylation atlas created from 521 noncancer samples, identifying specific methylation patterns that aid in accurately determining the tissue origin of cfDNA.
  • A new deep-learning model called supervised tissue deconvolution is developed, which shows improved sensitivity and accuracy for analyzing cfDNA, with applications in disease diagnosis and tracking treatment effects.
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Importance: Screening with low-dose computed tomography (CT) has been shown to reduce mortality from lung cancer in randomized clinical trials in which the rate of adherence to follow-up recommendations was over 90%; however, adherence to Lung Computed Tomography Screening Reporting & Data System (Lung-RADS) recommendations has been low in practice. Identifying patients who are at risk of being nonadherent to screening recommendations may enable personalized outreach to improve overall screening adherence.

Objective: To identify factors associated with patient nonadherence to Lung-RADS recommendations across multiple screening time points.

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Determining factors influencing patient participation in and adherence to cancer screening recommendations is key to successful cancer screening programs. However, the collection of variables necessary to anticipate patient behavior in cancer screening has not been systematically examined. Using lung cancer screening as a representative example, we conducted an exploratory analysis to characterize the current representations of 18 demographic, health-related, and psychosocial variables collected as part of a conceptual model to understand factors for lung cancer screening participation and adherence.

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Objectives: Discovering airway gene expression alterations associated with radiological bronchiectasis may improve the understanding of the pathobiology of early-stage bronchiectasis.

Methods: Presence of radiological bronchiectasis in 173 individuals without a clinical diagnosis of bronchiectasis was evaluated. Bronchial brushings from these individuals were transcriptomically profiled and analysed.

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  • * The researchers developed a method called cfMethyl-Seq, which allows for more efficient sequencing of methylation patterns in cell-free DNA, providing cost-effective analysis.
  • * When tested on a large cohort of cancer patients, the method demonstrated high specificity and decent sensitivity for detecting various cancer stages, providing accurate tissue origin identification as well.
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The NCCN Guidelines for Lung Cancer Screening recommend criteria for selecting individuals for screening and provide recommendations for evaluation and follow-up of lung nodules found during initial and subsequent screening. These NCCN Guidelines Insights focus on recent updates to the NCCN Guidelines for Lung Cancer Screening.

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Lung cancer screening (LCS) is effective in reducing mortality, particularly when patients adhere to follow-up recommendations standardized by the Lung CT Screening Reporting & Data System (Lung-RADS). Nevertheless, patient adherence to recommended intervals varies, potentially diminishing benefit from screening. We conducted a systematic review and meta-analysis of patient adherence to Lung-RADS-recommended screening intervals.

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